Protein Domain : IPR000592

Type:  Family Name:  Ribosomal protein S27e
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequencesimilarities. One of these families include mammalian, yeast, Chlamydomonas reinhardtiiand Entamoeba histolyticaS27, and Methanocaldococcus jannaschii(Methanococcus jannaschii) MJ0250 []. These proteins have from 62 to 87 amino acids. Theycontain, in their central section, a putative zinc-finger region of the type C-x(2)-C-x(14)-C-x(2)-C. Short Name:  Ribosomal_S27e

0 Child Features

0 Contains

5 Cross Referencess

Identifier
PTHR11594
PF01667
PD004466
PS01168
MF_00371

0 Found In

4 GO Annotations

GO Term Gene Name
GO:0003735 IPR000592
GO:0006412 IPR000592
GO:0005622 IPR000592
GO:0005840 IPR000592

4 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR000592
GO:0006412 IPR000592
GO:0005622 IPR000592
GO:0005840 IPR000592

0 Parent Features

982 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
114131 D8SCY4 PAC:15416882 Selaginella moellendorffii 77  
163947 D8QQW3 PAC:15411468 Selaginella moellendorffii 86  
evm.model.supercontig_70.49 PAC:16425334 Carica papaya 86  
evm.model.supercontig_70.87 PAC:16425376 Carica papaya 86  
30063.m001443 PAC:16816400 Ricinus communis 86  
30128.m008573 PAC:16818163 Ricinus communis 86  
Cucsa.033680.1 PAC:16952557 Cucumis sativus 118  
Cucsa.349170.1 PAC:16979733 Cucumis sativus 125  
AT3G61110.1 Q9M2F1 PAC:19660912 Arabidopsis thaliana 86  
AT3G61111.1 B3H5X2 PAC:19662704 Arabidopsis thaliana 86  
AT5G47930.1 Q8L953 PAC:19673093 Arabidopsis thaliana 84  
AT2G45710.1 O64650 PAC:19641060 Arabidopsis thaliana 84  
Thhalv10006345m PAC:20190560 Eutrema salsugineum 84  
Thhalv10001700m V4KMS3 PAC:20188975 Eutrema salsugineum 87  
Thhalv10009228m PAC:20187707 Eutrema salsugineum 84  
Thhalv10005209m V4KMM5 PAC:20200093 Eutrema salsugineum 84  
Ciclev10017332m PAC:20818172 Citrus clementina 86  
Ciclev10017799m V4U7R6 PAC:20816697 Citrus clementina 81  
Ciclev10017335m PAC:20818258 Citrus clementina 86  
Ciclev10017430m V4U2R5 PAC:20817150 Citrus clementina 52  
Ciclev10017423m V4U2R5 PAC:20817149 Citrus clementina 52  
Lus10032212 PAC:23168643 Linum usitatissimum 86  
Lus10024576 PAC:23161529 Linum usitatissimum 138  
Lus10031979 PAC:23161145 Linum usitatissimum 86  
Lus10031974 PAC:23161262 Linum usitatissimum 86  
Lus10035128 PAC:23162583 Linum usitatissimum 213  
Lus10035122 PAC:23162514 Linum usitatissimum 86  
Potri.001G069100.1 PAC:27045029 Populus trichocarpa 86  
Potri.003G161200.1 PAC:26997968 Populus trichocarpa 86  
Potri.006G192900.1 PAC:27004984 Populus trichocarpa 86  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498
            8441676