Gene : Pp3c12_250 P. patens v3.3
Defline:  (1 of 2) PTHR12509 - SPERMATOGENESIS-ASSOCIATED 4-RELATED Genomic Order:  8
Name:  ? Pp3c12_250 Secondary Identifier:  ? PAC:32974216
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c12_250 0.5kb upstream 0.5kb upstream 5625 true Chr12: 152558-158182 Physcomitrium patens
Pp3c12_250 0.5kb upstream 0.5kb upstream 500 false Chr12: 152558-153057 Physcomitrium patens
Pp3c12_250 0.5kb downstream 0.5kb downstream 5625 true Chr12: 153058-158682 Physcomitrium patens
Pp3c12_250 0.5kb downstream 0.5kb downstream 500 false Chr12: 158183-158682 Physcomitrium patens
Pp3c12_250 1.0kb upstream 1.0kb upstream 6125 true Chr12: 152058-158182 Physcomitrium patens
Pp3c12_250 1.0kb upstream 1.0kb upstream 1000 false Chr12: 152058-153057 Physcomitrium patens
Pp3c12_250 1.0kb downstream 1.0kb downstream 6125 true Chr12: 153058-159182 Physcomitrium patens
Pp3c12_250 1.0kb downstream 1.0kb downstream 1000 false Chr12: 158183-159182 Physcomitrium patens
Pp3c12_250 2.0kb upstream 2.0kb upstream 7125 true Chr12: 151058-158182 Physcomitrium patens
Pp3c12_250 2.0kb upstream 2.0kb upstream 2000 false Chr12: 151058-153057 Physcomitrium patens
Pp3c12_250 2.0kb downstream 2.0kb downstream 7125 true Chr12: 153058-160182 Physcomitrium patens
Pp3c12_250 2.0kb downstream 2.0kb downstream 2000 false Chr12: 158183-160182 Physcomitrium patens
Pp3c12_250 5.0kb upstream 5.0kb upstream 10125 true Chr12: 148058-158182 Physcomitrium patens
Pp3c12_250 5.0kb upstream 5.0kb upstream 5000 false Chr12: 148058-153057 Physcomitrium patens
Pp3c12_250 5.0kb downstream 5.0kb downstream 10125 true Chr12: 153058-163182 Physcomitrium patens
Pp3c12_250 5.0kb downstream 5.0kb downstream 5000 false Chr12: 158183-163182 Physcomitrium patens
Pp3c12_250 10.0kb upstream 10.0kb upstream 15125 true Chr12: 143058-158182 Physcomitrium patens
Pp3c12_250 10.0kb upstream 10.0kb upstream 10000 false Chr12: 143058-153057 Physcomitrium patens
Pp3c12_250 10.0kb downstream 10.0kb downstream 15125 true Chr12: 153058-168182 Physcomitrium patens
Pp3c12_250 10.0kb downstream 10.0kb downstream 10000 false Chr12: 158183-168182 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121334627 5274 Embryophyte Singleton cluster - no MSA
123371498 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 50.531     High  
cufflinks 139.031     High High
cufflinks 24.419     High  
cufflinks 170.103     High High
cufflinks 118.609     High  
cufflinks 75.142     High  
cufflinks 45.432     High  
cufflinks 4.146       Low
cufflinks 107.158     High  
cufflinks 0.948       Low
cufflinks 98.784     High  
cufflinks 49.439     High  
cufflinks 27.959     High  
cufflinks 73.237     High  
cufflinks 45.517     High  
cufflinks 9.085       Low
cufflinks 27.794     High  
cufflinks 20.671     High  
cufflinks 59.507     High  
cufflinks 45.524     High  
cufflinks 16.66        
cufflinks 207.444     High High
cufflinks 51.764     High  
cufflinks 0.944       Low
cufflinks 38.509     High  
cufflinks 131.541     High High
cufflinks 54.587     High  
cufflinks 22.387     High  
cufflinks 7.867       Low
cufflinks 175.599     High High

0 Strain