Gene : Pp3c11_22980 P. patens v3.3
Defline:  (1 of 5) PTHR24031//PTHR24031:SF322 - RNA HELICASE Genomic Order:  1085
Name:  ? Pp3c11_22980 Secondary Identifier:  ? PAC:32957584
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c11_22980 0.5kb upstream 0.5kb upstream 3952 true Chr11: 15126746-15130697 Physcomitrium patens
Pp3c11_22980 0.5kb upstream 0.5kb upstream 500 false Chr11: 15126746-15127245 Physcomitrium patens
Pp3c11_22980 0.5kb downstream 0.5kb downstream 3952 true Chr11: 15127246-15131197 Physcomitrium patens
Pp3c11_22980 0.5kb downstream 0.5kb downstream 500 false Chr11: 15130698-15131197 Physcomitrium patens
Pp3c11_22980 1.0kb upstream 1.0kb upstream 4452 true Chr11: 15126246-15130697 Physcomitrium patens
Pp3c11_22980 1.0kb upstream 1.0kb upstream 1000 false Chr11: 15126246-15127245 Physcomitrium patens
Pp3c11_22980 1.0kb downstream 1.0kb downstream 4452 true Chr11: 15127246-15131697 Physcomitrium patens
Pp3c11_22980 1.0kb downstream 1.0kb downstream 1000 false Chr11: 15130698-15131697 Physcomitrium patens
Pp3c11_22980 2.0kb upstream 2.0kb upstream 5452 true Chr11: 15125246-15130697 Physcomitrium patens
Pp3c11_22980 2.0kb upstream 2.0kb upstream 2000 false Chr11: 15125246-15127245 Physcomitrium patens
Pp3c11_22980 2.0kb downstream 2.0kb downstream 5452 true Chr11: 15127246-15132697 Physcomitrium patens
Pp3c11_22980 2.0kb downstream 2.0kb downstream 2000 false Chr11: 15130698-15132697 Physcomitrium patens
Pp3c11_22980 5.0kb upstream 5.0kb upstream 8452 true Chr11: 15122246-15130697 Physcomitrium patens
Pp3c11_22980 5.0kb upstream 5.0kb upstream 5000 false Chr11: 15122246-15127245 Physcomitrium patens
Pp3c11_22980 5.0kb downstream 5.0kb downstream 8452 true Chr11: 15127246-15135697 Physcomitrium patens
Pp3c11_22980 5.0kb downstream 5.0kb downstream 5000 false Chr11: 15130698-15135697 Physcomitrium patens
Pp3c11_22980 10.0kb upstream 10.0kb upstream 13452 true Chr11: 15117246-15130697 Physcomitrium patens
Pp3c11_22980 10.0kb upstream 10.0kb upstream 10000 false Chr11: 15117246-15127245 Physcomitrium patens
Pp3c11_22980 10.0kb downstream 10.0kb downstream 13452 true Chr11: 15127246-15140697 Physcomitrium patens
Pp3c11_22980 10.0kb downstream 10.0kb downstream 10000 false Chr11: 15130698-15140697 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345295 5274 Embryophyte View MSA
123427522 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 206.395     High  
cufflinks 221.51     High  
cufflinks 441.789     High High
cufflinks 263.339     High  
cufflinks 236.456     High  
cufflinks 197.327     High Low
cufflinks 248.748     High  
cufflinks 312.071     High  
cufflinks 146.131     High Low
cufflinks 211.213     High  
cufflinks 248.832     High  
cufflinks 371.347     High High
cufflinks 199.807     High Low
cufflinks 303.178     High  
cufflinks 330.303     High  
cufflinks 299.346     High  
cufflinks 237.738     High  
cufflinks 260.58     High  
cufflinks 273.878     High  
cufflinks 249.231     High  
cufflinks 247.034     High  
cufflinks 313.065     High  
cufflinks 168.596     High Low
cufflinks 346.329     High High
cufflinks 222.538     High  
cufflinks 209.236     High  
cufflinks 403.793     High High
cufflinks 404.397     High High
cufflinks 309.776     High  
cufflinks 221.748     High  

0 Strain