Gene : Pp3c9_22280 P. patens v3.3
Defline:  (1 of 1) PTHR14604 - WD40 REPEAT PF20 Genomic Order:  1037
Name:  ? Pp3c9_22280 Secondary Identifier:  ? PAC:32913177
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c9_22280 0.5kb upstream 0.5kb upstream 4625 true Chr09: 15109799-15114423 Physcomitrium patens
Pp3c9_22280 0.5kb upstream 0.5kb upstream 500 false Chr09: 15113924-15114423 Physcomitrium patens
Pp3c9_22280 0.5kb downstream 0.5kb downstream 4625 true Chr09: 15109299-15113923 Physcomitrium patens
Pp3c9_22280 0.5kb downstream 0.5kb downstream 500 false Chr09: 15109299-15109798 Physcomitrium patens
Pp3c9_22280 1.0kb upstream 1.0kb upstream 5125 true Chr09: 15109799-15114923 Physcomitrium patens
Pp3c9_22280 1.0kb upstream 1.0kb upstream 1000 false Chr09: 15113924-15114923 Physcomitrium patens
Pp3c9_22280 1.0kb downstream 1.0kb downstream 5125 true Chr09: 15108799-15113923 Physcomitrium patens
Pp3c9_22280 1.0kb downstream 1.0kb downstream 1000 false Chr09: 15108799-15109798 Physcomitrium patens
Pp3c9_22280 2.0kb upstream 2.0kb upstream 6125 true Chr09: 15109799-15115923 Physcomitrium patens
Pp3c9_22280 2.0kb upstream 2.0kb upstream 2000 false Chr09: 15113924-15115923 Physcomitrium patens
Pp3c9_22280 2.0kb downstream 2.0kb downstream 6125 true Chr09: 15107799-15113923 Physcomitrium patens
Pp3c9_22280 2.0kb downstream 2.0kb downstream 2000 false Chr09: 15107799-15109798 Physcomitrium patens
Pp3c9_22280 5.0kb upstream 5.0kb upstream 9125 true Chr09: 15109799-15118923 Physcomitrium patens
Pp3c9_22280 5.0kb upstream 5.0kb upstream 5000 false Chr09: 15113924-15118923 Physcomitrium patens
Pp3c9_22280 5.0kb downstream 5.0kb downstream 9125 true Chr09: 15104799-15113923 Physcomitrium patens
Pp3c9_22280 5.0kb downstream 5.0kb downstream 5000 false Chr09: 15104799-15109798 Physcomitrium patens
Pp3c9_22280 10.0kb upstream 10.0kb upstream 14125 true Chr09: 15109799-15123923 Physcomitrium patens
Pp3c9_22280 10.0kb upstream 10.0kb upstream 10000 false Chr09: 15113924-15123923 Physcomitrium patens
Pp3c9_22280 10.0kb downstream 10.0kb downstream 14125 true Chr09: 15099799-15113923 Physcomitrium patens
Pp3c9_22280 10.0kb downstream 10.0kb downstream 10000 false Chr09: 15099799-15109798 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343154 5274 Embryophyte View MSA
123427230 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.001     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low  
cufflinks 0.002     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.051     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low  
cufflinks 0.004     Low  
cufflinks 0.001     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.001     Low Low
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low High

0 Strain