Gene : Pp3c3_29910 P. patens v3.3
Defline:  (1 of 10) KOG2355 - Predicted ABC-type transport, ATPase component/CCR4 associated factor Genomic Order:  1382
Name:  ? Pp3c3_29910 Secondary Identifier:  ? PAC:32940554
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c3_29910 0.5kb upstream 0.5kb upstream 3158 true Chr03: 20434065-20437222 Physcomitrium patens
Pp3c3_29910 0.5kb upstream 0.5kb upstream 500 false Chr03: 20436723-20437222 Physcomitrium patens
Pp3c3_29910 0.5kb downstream 0.5kb downstream 3158 true Chr03: 20433565-20436722 Physcomitrium patens
Pp3c3_29910 0.5kb downstream 0.5kb downstream 500 false Chr03: 20433565-20434064 Physcomitrium patens
Pp3c3_29910 1.0kb upstream 1.0kb upstream 3658 true Chr03: 20434065-20437722 Physcomitrium patens
Pp3c3_29910 1.0kb upstream 1.0kb upstream 1000 false Chr03: 20436723-20437722 Physcomitrium patens
Pp3c3_29910 1.0kb downstream 1.0kb downstream 3658 true Chr03: 20433065-20436722 Physcomitrium patens
Pp3c3_29910 1.0kb downstream 1.0kb downstream 1000 false Chr03: 20433065-20434064 Physcomitrium patens
Pp3c3_29910 2.0kb upstream 2.0kb upstream 4658 true Chr03: 20434065-20438722 Physcomitrium patens
Pp3c3_29910 2.0kb upstream 2.0kb upstream 2000 false Chr03: 20436723-20438722 Physcomitrium patens
Pp3c3_29910 2.0kb downstream 2.0kb downstream 4658 true Chr03: 20432065-20436722 Physcomitrium patens
Pp3c3_29910 2.0kb downstream 2.0kb downstream 2000 false Chr03: 20432065-20434064 Physcomitrium patens
Pp3c3_29910 5.0kb upstream 5.0kb upstream 7658 true Chr03: 20434065-20441722 Physcomitrium patens
Pp3c3_29910 5.0kb upstream 5.0kb upstream 5000 false Chr03: 20436723-20441722 Physcomitrium patens
Pp3c3_29910 5.0kb downstream 5.0kb downstream 7658 true Chr03: 20429065-20436722 Physcomitrium patens
Pp3c3_29910 5.0kb downstream 5.0kb downstream 5000 false Chr03: 20429065-20434064 Physcomitrium patens
Pp3c3_29910 10.0kb upstream 10.0kb upstream 12658 true Chr03: 20434065-20446722 Physcomitrium patens
Pp3c3_29910 10.0kb upstream 10.0kb upstream 10000 false Chr03: 20436723-20446722 Physcomitrium patens
Pp3c3_29910 10.0kb downstream 10.0kb downstream 12658 true Chr03: 20424065-20436722 Physcomitrium patens
Pp3c3_29910 10.0kb downstream 10.0kb downstream 10000 false Chr03: 20424065-20434064 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429075 5275 Viridiplantae View MSA
121344909 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.603        
cufflinks 2.541        
cufflinks 1.907        
cufflinks 2.706        
cufflinks 2.154        
cufflinks 2.33        
cufflinks 2.859        
cufflinks 1.882        
cufflinks 3.205        
cufflinks 1.586        
cufflinks 1.053       Low
cufflinks 1.214       Low
cufflinks 2.14        
cufflinks 3.273        
cufflinks 3.064        
cufflinks 3.376        
cufflinks 2.475        
cufflinks 1.032       Low
cufflinks 0.674       Low
cufflinks 3.265        
cufflinks 1.956        
cufflinks 1.58        
cufflinks 3.773       High
cufflinks 0.639       Low
cufflinks 1.881        
cufflinks 3.176        
cufflinks 1.652        
cufflinks 3.084        
cufflinks 3.445        
cufflinks 2.341        

0 Strain