Gene : Pp3c22_17530 P. patens v3.3
Defline:  (1 of 25) PF06985 - Heterokaryon incompatibility protein (HET) (HET) Genomic Order:  780
Name:  ? Pp3c22_17530 Secondary Identifier:  ? PAC:32903261
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c22_17530 0.5kb upstream 0.5kb upstream 5034 true Chr22: 11312234-11317267 Physcomitrium patens
Pp3c22_17530 0.5kb upstream 0.5kb upstream 500 false Chr22: 11312234-11312733 Physcomitrium patens
Pp3c22_17530 0.5kb downstream 0.5kb downstream 5034 true Chr22: 11312734-11317767 Physcomitrium patens
Pp3c22_17530 0.5kb downstream 0.5kb downstream 500 false Chr22: 11317268-11317767 Physcomitrium patens
Pp3c22_17530 1.0kb upstream 1.0kb upstream 5534 true Chr22: 11311734-11317267 Physcomitrium patens
Pp3c22_17530 1.0kb upstream 1.0kb upstream 1000 false Chr22: 11311734-11312733 Physcomitrium patens
Pp3c22_17530 1.0kb downstream 1.0kb downstream 5534 true Chr22: 11312734-11318267 Physcomitrium patens
Pp3c22_17530 1.0kb downstream 1.0kb downstream 1000 false Chr22: 11317268-11318267 Physcomitrium patens
Pp3c22_17530 2.0kb upstream 2.0kb upstream 6534 true Chr22: 11310734-11317267 Physcomitrium patens
Pp3c22_17530 2.0kb upstream 2.0kb upstream 2000 false Chr22: 11310734-11312733 Physcomitrium patens
Pp3c22_17530 2.0kb downstream 2.0kb downstream 6534 true Chr22: 11312734-11319267 Physcomitrium patens
Pp3c22_17530 2.0kb downstream 2.0kb downstream 2000 false Chr22: 11317268-11319267 Physcomitrium patens
Pp3c22_17530 5.0kb upstream 5.0kb upstream 9534 true Chr22: 11307734-11317267 Physcomitrium patens
Pp3c22_17530 5.0kb upstream 5.0kb upstream 5000 false Chr22: 11307734-11312733 Physcomitrium patens
Pp3c22_17530 5.0kb downstream 5.0kb downstream 9534 true Chr22: 11312734-11322267 Physcomitrium patens
Pp3c22_17530 5.0kb downstream 5.0kb downstream 5000 false Chr22: 11317268-11322267 Physcomitrium patens
Pp3c22_17530 10.0kb upstream 10.0kb upstream 14534 true Chr22: 11302734-11317267 Physcomitrium patens
Pp3c22_17530 10.0kb upstream 10.0kb upstream 10000 false Chr22: 11302734-11312733 Physcomitrium patens
Pp3c22_17530 10.0kb downstream 10.0kb downstream 14534 true Chr22: 11312734-11327267 Physcomitrium patens
Pp3c22_17530 10.0kb downstream 10.0kb downstream 10000 false Chr22: 11317268-11327267 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121325463 5274 Embryophyte Singleton cluster - no MSA
123362524 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.837        
cufflinks 1.491       Low
cufflinks 4.779        
cufflinks 4.12        
cufflinks 6.857       High
cufflinks 5.299        
cufflinks 1.406       Low
cufflinks 3.495        
cufflinks 3.497        
cufflinks 4.306        
cufflinks 7.374       High
cufflinks 1.507       Low
cufflinks 6.568       High
cufflinks 4.319        
cufflinks 6.656       High
cufflinks 3.712        
cufflinks 5.156        
cufflinks 4.645        
cufflinks 4.176        
cufflinks 1.535       Low
cufflinks 5.309        
cufflinks 2.626        
cufflinks 4.304        
cufflinks 7.28       High
cufflinks 3.697        
cufflinks 3.781        
cufflinks 3.537        
cufflinks 7.85       High
cufflinks 4.287        
cufflinks 2.703        

0 Strain