Gene : Pp3c17_4800 P. patens v3.3
Defline:  (1 of 2) PTHR12917:SF1 - AT13091P Genomic Order:  189
Name:  ? Pp3c17_4800 Secondary Identifier:  ? PAC:32907850
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c17_4800 0.5kb upstream 0.5kb upstream 6233 true Chr17: 3771477-3777709 Physcomitrium patens
Pp3c17_4800 0.5kb upstream 0.5kb upstream 500 false Chr17: 3771477-3771976 Physcomitrium patens
Pp3c17_4800 0.5kb downstream 0.5kb downstream 6233 true Chr17: 3771977-3778209 Physcomitrium patens
Pp3c17_4800 0.5kb downstream 0.5kb downstream 500 false Chr17: 3777710-3778209 Physcomitrium patens
Pp3c17_4800 1.0kb upstream 1.0kb upstream 6733 true Chr17: 3770977-3777709 Physcomitrium patens
Pp3c17_4800 1.0kb upstream 1.0kb upstream 1000 false Chr17: 3770977-3771976 Physcomitrium patens
Pp3c17_4800 1.0kb downstream 1.0kb downstream 6733 true Chr17: 3771977-3778709 Physcomitrium patens
Pp3c17_4800 1.0kb downstream 1.0kb downstream 1000 false Chr17: 3777710-3778709 Physcomitrium patens
Pp3c17_4800 2.0kb upstream 2.0kb upstream 7733 true Chr17: 3769977-3777709 Physcomitrium patens
Pp3c17_4800 2.0kb upstream 2.0kb upstream 2000 false Chr17: 3769977-3771976 Physcomitrium patens
Pp3c17_4800 2.0kb downstream 2.0kb downstream 7733 true Chr17: 3771977-3779709 Physcomitrium patens
Pp3c17_4800 2.0kb downstream 2.0kb downstream 2000 false Chr17: 3777710-3779709 Physcomitrium patens
Pp3c17_4800 5.0kb upstream 5.0kb upstream 10733 true Chr17: 3766977-3777709 Physcomitrium patens
Pp3c17_4800 5.0kb upstream 5.0kb upstream 5000 false Chr17: 3766977-3771976 Physcomitrium patens
Pp3c17_4800 5.0kb downstream 5.0kb downstream 10733 true Chr17: 3771977-3782709 Physcomitrium patens
Pp3c17_4800 5.0kb downstream 5.0kb downstream 5000 false Chr17: 3777710-3782709 Physcomitrium patens
Pp3c17_4800 10.0kb upstream 10.0kb upstream 15733 true Chr17: 3761977-3777709 Physcomitrium patens
Pp3c17_4800 10.0kb upstream 10.0kb upstream 10000 false Chr17: 3761977-3771976 Physcomitrium patens
Pp3c17_4800 10.0kb downstream 10.0kb downstream 15733 true Chr17: 3771977-3787709 Physcomitrium patens
Pp3c17_4800 10.0kb downstream 10.0kb downstream 10000 false Chr17: 3777710-3787709 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343926 5274 Embryophyte View MSA
123424063 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.004     Low Low
cufflinks 0.102       High
cufflinks 0.004     Low Low
cufflinks 0.015     Low  
cufflinks 0.018     Low  
cufflinks 0.016     Low  
cufflinks 0.018     Low  
cufflinks 0.004     Low Low
cufflinks 0.034     Low  
cufflinks 0.039     Low  
cufflinks 0.02     Low  
cufflinks 0.027     Low  
cufflinks 0.001     Low Low
cufflinks 0.022     Low  
cufflinks 0.039     Low  
cufflinks 0.006     Low  
cufflinks 0.036     Low  
cufflinks 0.024     Low  
cufflinks 0.006     Low  
cufflinks 0.058     Low High
cufflinks 0.005     Low  
cufflinks 0.063     Low High
cufflinks 0.102       High
cufflinks 0.004     Low Low
cufflinks 0.018     Low  
cufflinks 0.009     Low  
cufflinks 0.001     Low Low
cufflinks 0.015     Low  
cufflinks 0.054     Low High
cufflinks 0.028     Low  

0 Strain