Gene : Pp3c14_10 P. patens v3.3
Defline:  (1 of 4) PTHR24148:SF6 - ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39 HOMOLOG Genomic Order:  1
Name:  ? Pp3c14_10 Secondary Identifier:  ? PAC:32962936
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c14_10 0.5kb upstream 0.5kb upstream 4722 true Chr14: 1439-6160 Physcomitrium patens
Pp3c14_10 0.5kb upstream 0.5kb upstream 500 false Chr14: 1439-1938 Physcomitrium patens
Pp3c14_10 0.5kb downstream 0.5kb downstream 4722 true Chr14: 1939-6660 Physcomitrium patens
Pp3c14_10 0.5kb downstream 0.5kb downstream 500 false Chr14: 6161-6660 Physcomitrium patens
Pp3c14_10 1.0kb upstream 1.0kb upstream 5222 true Chr14: 939-6160 Physcomitrium patens
Pp3c14_10 1.0kb upstream 1.0kb upstream 1000 false Chr14: 939-1938 Physcomitrium patens
Pp3c14_10 1.0kb downstream 1.0kb downstream 5222 true Chr14: 1939-7160 Physcomitrium patens
Pp3c14_10 1.0kb downstream 1.0kb downstream 1000 false Chr14: 6161-7160 Physcomitrium patens
Pp3c14_10 2.0kb upstream 2.0kb upstream 6160 true Chr14: 1-6160 Physcomitrium patens
Pp3c14_10 2.0kb upstream 2.0kb upstream 1938 false Chr14: 1-1938 Physcomitrium patens
Pp3c14_10 2.0kb downstream 2.0kb downstream 6222 true Chr14: 1939-8160 Physcomitrium patens
Pp3c14_10 2.0kb downstream 2.0kb downstream 2000 false Chr14: 6161-8160 Physcomitrium patens
Pp3c14_10 5.0kb upstream 5.0kb upstream 6160 true Chr14: 1-6160 Physcomitrium patens
Pp3c14_10 5.0kb upstream 5.0kb upstream 1938 false Chr14: 1-1938 Physcomitrium patens
Pp3c14_10 5.0kb downstream 5.0kb downstream 9222 true Chr14: 1939-11160 Physcomitrium patens
Pp3c14_10 5.0kb downstream 5.0kb downstream 5000 false Chr14: 6161-11160 Physcomitrium patens
Pp3c14_10 10.0kb upstream 10.0kb upstream 6160 true Chr14: 1-6160 Physcomitrium patens
Pp3c14_10 10.0kb upstream 10.0kb upstream 1938 false Chr14: 1-1938 Physcomitrium patens
Pp3c14_10 10.0kb downstream 10.0kb downstream 14222 true Chr14: 1939-16160 Physcomitrium patens
Pp3c14_10 10.0kb downstream 10.0kb downstream 10000 false Chr14: 6161-16160 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121336640 5274 Embryophyte View MSA
123373458 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.824       Low
cufflinks 26.426     High  
cufflinks 12.672       Low
cufflinks 87.98     High High
cufflinks 36.264     High  
cufflinks 21.699     High  
cufflinks 22.649     High  
cufflinks 30.898     High  
cufflinks 42.478     High  
cufflinks 7.537       Low
cufflinks 32.744     High  
cufflinks 20.567        
cufflinks 45.178     High  
cufflinks 72.158     High High
cufflinks 25.362     High  
cufflinks 36.58     High  
cufflinks 47.234     High  
cufflinks 23.693     High  
cufflinks 11.18       Low
cufflinks 12.217       Low
cufflinks 23.308     High  
cufflinks 31.972     High  
cufflinks 38.14     High  
cufflinks 14.819        
cufflinks 31.055     High  
cufflinks 19.872     High  
cufflinks 41.081     High  
cufflinks 20.767     High  
cufflinks 34.802     High  
cufflinks 35.828     High  

0 Strain