Gene : Pp3c13_970 P. patens v3.3
Defline:  (1 of 25) PF06985 - Heterokaryon incompatibility protein (HET) (HET) Genomic Order:  28
Name:  ? Pp3c13_970 Secondary Identifier:  ? PAC:32931452
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c13_970 0.5kb upstream 0.5kb upstream 3006 true Chr13: 539001-542006 Physcomitrium patens
Pp3c13_970 0.5kb upstream 0.5kb upstream 500 false Chr13: 539001-539500 Physcomitrium patens
Pp3c13_970 0.5kb downstream 0.5kb downstream 3006 true Chr13: 539501-542506 Physcomitrium patens
Pp3c13_970 0.5kb downstream 0.5kb downstream 500 false Chr13: 542007-542506 Physcomitrium patens
Pp3c13_970 1.0kb upstream 1.0kb upstream 3506 true Chr13: 538501-542006 Physcomitrium patens
Pp3c13_970 1.0kb upstream 1.0kb upstream 1000 false Chr13: 538501-539500 Physcomitrium patens
Pp3c13_970 1.0kb downstream 1.0kb downstream 3506 true Chr13: 539501-543006 Physcomitrium patens
Pp3c13_970 1.0kb downstream 1.0kb downstream 1000 false Chr13: 542007-543006 Physcomitrium patens
Pp3c13_970 2.0kb upstream 2.0kb upstream 4506 true Chr13: 537501-542006 Physcomitrium patens
Pp3c13_970 2.0kb upstream 2.0kb upstream 2000 false Chr13: 537501-539500 Physcomitrium patens
Pp3c13_970 2.0kb downstream 2.0kb downstream 4506 true Chr13: 539501-544006 Physcomitrium patens
Pp3c13_970 2.0kb downstream 2.0kb downstream 2000 false Chr13: 542007-544006 Physcomitrium patens
Pp3c13_970 5.0kb upstream 5.0kb upstream 7506 true Chr13: 534501-542006 Physcomitrium patens
Pp3c13_970 5.0kb upstream 5.0kb upstream 5000 false Chr13: 534501-539500 Physcomitrium patens
Pp3c13_970 5.0kb downstream 5.0kb downstream 7506 true Chr13: 539501-547006 Physcomitrium patens
Pp3c13_970 5.0kb downstream 5.0kb downstream 5000 false Chr13: 542007-547006 Physcomitrium patens
Pp3c13_970 10.0kb upstream 10.0kb upstream 12506 true Chr13: 529501-542006 Physcomitrium patens
Pp3c13_970 10.0kb upstream 10.0kb upstream 10000 false Chr13: 529501-539500 Physcomitrium patens
Pp3c13_970 10.0kb downstream 10.0kb downstream 12506 true Chr13: 539501-552006 Physcomitrium patens
Pp3c13_970 10.0kb downstream 10.0kb downstream 10000 false Chr13: 542007-552006 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121329083 5274 Embryophyte Singleton cluster - no MSA
123366075 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.346        
cufflinks 0.603        
cufflinks 1.529        
cufflinks 0.963        
cufflinks 0.332        
cufflinks 1.498        
cufflinks 0.045     Low Low
cufflinks 0.108       Low
cufflinks 0.014     Low Low
cufflinks 0.695        
cufflinks 0.302        
cufflinks 1.447        
cufflinks 2.583       High
cufflinks 1.257        
cufflinks 1.505        
cufflinks 0.262        
cufflinks 1.294        
cufflinks 0.269        
cufflinks 1.624        
cufflinks 0.352        
cufflinks 0.334        
cufflinks 0.044     Low Low
cufflinks 1.446        
cufflinks 0.189        
cufflinks 0.83        
cufflinks 0.688        
cufflinks 0.82        
cufflinks 1.766        
cufflinks 0.703        
cufflinks 0.635        

0 Strain