Gene : Pp3c13_190 P. patens v3.3
Defline:  (1 of 25) PF06985 - Heterokaryon incompatibility protein (HET) (HET) Genomic Order:  9
Name:  ? Pp3c13_190 Secondary Identifier:  ? PAC:32931890
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c13_190 0.5kb upstream 0.5kb upstream 5054 true Chr13: 64232-69285 Physcomitrium patens
Pp3c13_190 0.5kb upstream 0.5kb upstream 500 false Chr13: 64232-64731 Physcomitrium patens
Pp3c13_190 0.5kb downstream 0.5kb downstream 5054 true Chr13: 64732-69785 Physcomitrium patens
Pp3c13_190 0.5kb downstream 0.5kb downstream 500 false Chr13: 69286-69785 Physcomitrium patens
Pp3c13_190 1.0kb upstream 1.0kb upstream 5554 true Chr13: 63732-69285 Physcomitrium patens
Pp3c13_190 1.0kb upstream 1.0kb upstream 1000 false Chr13: 63732-64731 Physcomitrium patens
Pp3c13_190 1.0kb downstream 1.0kb downstream 5554 true Chr13: 64732-70285 Physcomitrium patens
Pp3c13_190 1.0kb downstream 1.0kb downstream 1000 false Chr13: 69286-70285 Physcomitrium patens
Pp3c13_190 2.0kb upstream 2.0kb upstream 6554 true Chr13: 62732-69285 Physcomitrium patens
Pp3c13_190 2.0kb upstream 2.0kb upstream 2000 false Chr13: 62732-64731 Physcomitrium patens
Pp3c13_190 2.0kb downstream 2.0kb downstream 6554 true Chr13: 64732-71285 Physcomitrium patens
Pp3c13_190 2.0kb downstream 2.0kb downstream 2000 false Chr13: 69286-71285 Physcomitrium patens
Pp3c13_190 5.0kb upstream 5.0kb upstream 9554 true Chr13: 59732-69285 Physcomitrium patens
Pp3c13_190 5.0kb upstream 5.0kb upstream 5000 false Chr13: 59732-64731 Physcomitrium patens
Pp3c13_190 5.0kb downstream 5.0kb downstream 9554 true Chr13: 64732-74285 Physcomitrium patens
Pp3c13_190 5.0kb downstream 5.0kb downstream 5000 false Chr13: 69286-74285 Physcomitrium patens
Pp3c13_190 10.0kb upstream 10.0kb upstream 14554 true Chr13: 54732-69285 Physcomitrium patens
Pp3c13_190 10.0kb upstream 10.0kb upstream 10000 false Chr13: 54732-64731 Physcomitrium patens
Pp3c13_190 10.0kb downstream 10.0kb downstream 14554 true Chr13: 64732-79285 Physcomitrium patens
Pp3c13_190 10.0kb downstream 10.0kb downstream 10000 false Chr13: 69286-79285 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121336975 5274 Embryophyte View MSA
123373777 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.003     Low  
cufflinks 0.005     Low  
cufflinks 0.001     Low Low
cufflinks 0.009     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low Low
cufflinks 0.001     Low Low
cufflinks 0.005     Low  
cufflinks 0.002     Low  
cufflinks 0.008     Low  
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low  
cufflinks 0.004     Low  
cufflinks 0.002     Low  
cufflinks 0.005     Low  
cufflinks 0.002     Low  
cufflinks 0.006     Low  
cufflinks 0.006     Low  
cufflinks 0.016     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low High
cufflinks 0.002     Low  
cufflinks 0.01     Low High
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low  
cufflinks 0.005     Low  
cufflinks 0.009     Low High
cufflinks 0.005     Low  

0 Strain