Gene : Bradi4g13580 B. distachyon v3.1
Defline:  (1 of 2) PF01117 - Aerolysin toxin (Aerolysin) Genomic Order:  1840
Name:  ? Bradi4g13580 Secondary Identifier:  ? PAC:32782971
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g13580 0.5kb upstream 0.5kb upstream 2797 true Bd4: 13958901-13961697 Brachypodium distachyon
Bradi4g13580 0.5kb upstream 0.5kb upstream 500 false Bd4: 13958901-13959400 Brachypodium distachyon
Bradi4g13580 0.5kb downstream 0.5kb downstream 2797 true Bd4: 13959401-13962197 Brachypodium distachyon
Bradi4g13580 0.5kb downstream 0.5kb downstream 500 false Bd4: 13961698-13962197 Brachypodium distachyon
Bradi4g13580 1.0kb upstream 1.0kb upstream 3297 true Bd4: 13958401-13961697 Brachypodium distachyon
Bradi4g13580 1.0kb upstream 1.0kb upstream 1000 false Bd4: 13958401-13959400 Brachypodium distachyon
Bradi4g13580 1.0kb downstream 1.0kb downstream 3297 true Bd4: 13959401-13962697 Brachypodium distachyon
Bradi4g13580 1.0kb downstream 1.0kb downstream 1000 false Bd4: 13961698-13962697 Brachypodium distachyon
Bradi4g13580 2.0kb upstream 2.0kb upstream 4297 true Bd4: 13957401-13961697 Brachypodium distachyon
Bradi4g13580 2.0kb upstream 2.0kb upstream 2000 false Bd4: 13957401-13959400 Brachypodium distachyon
Bradi4g13580 2.0kb downstream 2.0kb downstream 4297 true Bd4: 13959401-13963697 Brachypodium distachyon
Bradi4g13580 2.0kb downstream 2.0kb downstream 2000 false Bd4: 13961698-13963697 Brachypodium distachyon
Bradi4g13580 5.0kb upstream 5.0kb upstream 7297 true Bd4: 13954401-13961697 Brachypodium distachyon
Bradi4g13580 5.0kb upstream 5.0kb upstream 5000 false Bd4: 13954401-13959400 Brachypodium distachyon
Bradi4g13580 5.0kb downstream 5.0kb downstream 7297 true Bd4: 13959401-13966697 Brachypodium distachyon
Bradi4g13580 5.0kb downstream 5.0kb downstream 5000 false Bd4: 13961698-13966697 Brachypodium distachyon
Bradi4g13580 10.0kb upstream 10.0kb upstream 12297 true Bd4: 13949401-13961697 Brachypodium distachyon
Bradi4g13580 10.0kb upstream 10.0kb upstream 10000 false Bd4: 13949401-13959400 Brachypodium distachyon
Bradi4g13580 10.0kb downstream 10.0kb downstream 12297 true Bd4: 13959401-13971697 Brachypodium distachyon
Bradi4g13580 10.0kb downstream 10.0kb downstream 10000 false Bd4: 13961698-13971697 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029421 5273 Angiosperm View MSA
124590439 5269 Grass View MSA
121348691 5274 Embryophyte View MSA
123380974 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 127.35     High  
cufflinks 2.982       Low
cufflinks 29.105     High  
cufflinks 2.544       Low
cufflinks 1891.808     High High
cufflinks 10.948     High  
cufflinks 4.917        
cufflinks 29.944     High  
cufflinks 19.171     High  
cufflinks 19.959     High  
cufflinks 5.162        
cufflinks 30.358     High  
cufflinks 2.323       Low
cufflinks 4.364        
cufflinks 58.958     High  
cufflinks 16.928     High  
cufflinks 50.767     High  
cufflinks 5.496        
cufflinks 554.097     High High
cufflinks 490.962     High High
cufflinks 51.028     High  
cufflinks 35.126     High  
cufflinks 56.564     High  
cufflinks 25.982     High  
cufflinks 13.364     High  
cufflinks 69.724     High  
cufflinks 0.381       Low
cufflinks 65.46     High  
cufflinks 61.454     High  
cufflinks 30.584     High  

0 Strain