Gene : Bradi3g01489 B. distachyon v3.1
Defline:  (1 of 158) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  157
Name:  ? Bradi3g01489 Secondary Identifier:  ? PAC:32813869
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g01489 0.5kb upstream 0.5kb upstream 2357 true Bd3: 952729-955085 Brachypodium distachyon
Bradi3g01489 0.5kb upstream 0.5kb upstream 500 false Bd3: 954586-955085 Brachypodium distachyon
Bradi3g01489 0.5kb downstream 0.5kb downstream 2357 true Bd3: 952229-954585 Brachypodium distachyon
Bradi3g01489 0.5kb downstream 0.5kb downstream 500 false Bd3: 952229-952728 Brachypodium distachyon
Bradi3g01489 1.0kb upstream 1.0kb upstream 2857 true Bd3: 952729-955585 Brachypodium distachyon
Bradi3g01489 1.0kb upstream 1.0kb upstream 1000 false Bd3: 954586-955585 Brachypodium distachyon
Bradi3g01489 1.0kb downstream 1.0kb downstream 2857 true Bd3: 951729-954585 Brachypodium distachyon
Bradi3g01489 1.0kb downstream 1.0kb downstream 1000 false Bd3: 951729-952728 Brachypodium distachyon
Bradi3g01489 2.0kb upstream 2.0kb upstream 3857 true Bd3: 952729-956585 Brachypodium distachyon
Bradi3g01489 2.0kb upstream 2.0kb upstream 2000 false Bd3: 954586-956585 Brachypodium distachyon
Bradi3g01489 2.0kb downstream 2.0kb downstream 3857 true Bd3: 950729-954585 Brachypodium distachyon
Bradi3g01489 2.0kb downstream 2.0kb downstream 2000 false Bd3: 950729-952728 Brachypodium distachyon
Bradi3g01489 5.0kb upstream 5.0kb upstream 6857 true Bd3: 952729-959585 Brachypodium distachyon
Bradi3g01489 5.0kb upstream 5.0kb upstream 5000 false Bd3: 954586-959585 Brachypodium distachyon
Bradi3g01489 5.0kb downstream 5.0kb downstream 6857 true Bd3: 947729-954585 Brachypodium distachyon
Bradi3g01489 5.0kb downstream 5.0kb downstream 5000 false Bd3: 947729-952728 Brachypodium distachyon
Bradi3g01489 10.0kb upstream 10.0kb upstream 11857 true Bd3: 952729-964585 Brachypodium distachyon
Bradi3g01489 10.0kb upstream 10.0kb upstream 10000 false Bd3: 954586-964585 Brachypodium distachyon
Bradi3g01489 10.0kb downstream 10.0kb downstream 11857 true Bd3: 942729-954585 Brachypodium distachyon
Bradi3g01489 10.0kb downstream 10.0kb downstream 10000 false Bd3: 942729-952728 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029261 5273 Angiosperm View MSA
124587623 5269 Grass View MSA
121298616 5274 Embryophyte View MSA
123336578 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.893        
cufflinks 1.219        
cufflinks 1.151        
cufflinks 0.976        
cufflinks 0.76        
cufflinks 1.284        
cufflinks 1.247        
cufflinks 1.026        
cufflinks 1.59        
cufflinks 0.425        
cufflinks 0.638        
cufflinks 1.1        
cufflinks 0.337       Low
cufflinks 0.292       Low
cufflinks 1.367        
cufflinks 1.585        
cufflinks 0.536        
cufflinks 1.985       High
cufflinks 0.216       Low
cufflinks 0.487        
cufflinks 0.431        
cufflinks 1.141        
cufflinks 0.88        
cufflinks 0.876        
cufflinks 1.066        
cufflinks 0.732        
cufflinks 0.437        
cufflinks 0.661        
cufflinks 0.827        
cufflinks 1.727       High

0 Strain