Gene : Bradi3g00690 B. distachyon v3.1
Defline:  (1 of 1) PTHR11089:SF43 - NO-ASSOCIATED PROTEIN 1, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  66
Name:  ? Bradi3g00690 Secondary Identifier:  ? PAC:32814769
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6845 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g00690 0.5kb upstream 0.5kb upstream 4893 true Bd3: 375798-380690 Brachypodium distachyon
Bradi3g00690 0.5kb upstream 0.5kb upstream 500 false Bd3: 380191-380690 Brachypodium distachyon
Bradi3g00690 0.5kb downstream 0.5kb downstream 4893 true Bd3: 375298-380190 Brachypodium distachyon
Bradi3g00690 0.5kb downstream 0.5kb downstream 500 false Bd3: 375298-375797 Brachypodium distachyon
Bradi3g00690 1.0kb upstream 1.0kb upstream 5393 true Bd3: 375798-381190 Brachypodium distachyon
Bradi3g00690 1.0kb upstream 1.0kb upstream 1000 false Bd3: 380191-381190 Brachypodium distachyon
Bradi3g00690 1.0kb downstream 1.0kb downstream 5393 true Bd3: 374798-380190 Brachypodium distachyon
Bradi3g00690 1.0kb downstream 1.0kb downstream 1000 false Bd3: 374798-375797 Brachypodium distachyon
Bradi3g00690 2.0kb upstream 2.0kb upstream 6393 true Bd3: 375798-382190 Brachypodium distachyon
Bradi3g00690 2.0kb upstream 2.0kb upstream 2000 false Bd3: 380191-382190 Brachypodium distachyon
Bradi3g00690 2.0kb downstream 2.0kb downstream 6393 true Bd3: 373798-380190 Brachypodium distachyon
Bradi3g00690 2.0kb downstream 2.0kb downstream 2000 false Bd3: 373798-375797 Brachypodium distachyon
Bradi3g00690 5.0kb upstream 5.0kb upstream 9393 true Bd3: 375798-385190 Brachypodium distachyon
Bradi3g00690 5.0kb upstream 5.0kb upstream 5000 false Bd3: 380191-385190 Brachypodium distachyon
Bradi3g00690 5.0kb downstream 5.0kb downstream 9393 true Bd3: 370798-380190 Brachypodium distachyon
Bradi3g00690 5.0kb downstream 5.0kb downstream 5000 false Bd3: 370798-375797 Brachypodium distachyon
Bradi3g00690 10.0kb upstream 10.0kb upstream 14393 true Bd3: 375798-390190 Brachypodium distachyon
Bradi3g00690 10.0kb upstream 10.0kb upstream 10000 false Bd3: 380191-390190 Brachypodium distachyon
Bradi3g00690 10.0kb downstream 10.0kb downstream 14393 true Bd3: 365798-380190 Brachypodium distachyon
Bradi3g00690 10.0kb downstream 10.0kb downstream 10000 false Bd3: 365798-375797 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578495 5269 Grass View MSA
122045244 5273 Angiosperm View MSA
121346425 5274 Embryophyte View MSA
123426230 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.463        
cufflinks 14.073     High High
cufflinks 14.567     High High
cufflinks 14.425     High High
cufflinks 6.212        
cufflinks 12.147     High  
cufflinks 11.909     High  
cufflinks 10.476     High  
cufflinks 11.011     High  
cufflinks 11.775     High  
cufflinks 11.635     High  
cufflinks 10.33     High  
cufflinks 8.011     High  
cufflinks 9.553     High  
cufflinks 9.194     High  
cufflinks 12.281     High  
cufflinks 8.947        
cufflinks 3.074       Low
cufflinks 6.013       Low
cufflinks 4.16       Low
cufflinks 5.676       Low
cufflinks 12.226     High  
cufflinks 9.41     High  
cufflinks 10.178     High  
cufflinks 11.711     High  
cufflinks 14.479     High High
cufflinks 8.478        
cufflinks 13.545     High  
cufflinks 12.917     High  
cufflinks 8.991        

0 Strain