Gene : Bradi2g45987 B. distachyon v3.1
Defline:  (1 of 1) PTHR12811 - VACUOLAR PROTEIN SORTING VPS16 Genomic Order:  5503
Name:  ? Bradi2g45987 Secondary Identifier:  ? PAC:32776463
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g45987 0.5kb upstream 0.5kb upstream 11048 true Bd2: 46207226-46218273 Brachypodium distachyon
Bradi2g45987 0.5kb upstream 0.5kb upstream 500 false Bd2: 46207226-46207725 Brachypodium distachyon
Bradi2g45987 0.5kb downstream 0.5kb downstream 11048 true Bd2: 46207726-46218773 Brachypodium distachyon
Bradi2g45987 0.5kb downstream 0.5kb downstream 500 false Bd2: 46218274-46218773 Brachypodium distachyon
Bradi2g45987 1.0kb upstream 1.0kb upstream 11548 true Bd2: 46206726-46218273 Brachypodium distachyon
Bradi2g45987 1.0kb upstream 1.0kb upstream 1000 false Bd2: 46206726-46207725 Brachypodium distachyon
Bradi2g45987 1.0kb downstream 1.0kb downstream 11548 true Bd2: 46207726-46219273 Brachypodium distachyon
Bradi2g45987 1.0kb downstream 1.0kb downstream 1000 false Bd2: 46218274-46219273 Brachypodium distachyon
Bradi2g45987 2.0kb upstream 2.0kb upstream 12548 true Bd2: 46205726-46218273 Brachypodium distachyon
Bradi2g45987 2.0kb upstream 2.0kb upstream 2000 false Bd2: 46205726-46207725 Brachypodium distachyon
Bradi2g45987 2.0kb downstream 2.0kb downstream 12548 true Bd2: 46207726-46220273 Brachypodium distachyon
Bradi2g45987 2.0kb downstream 2.0kb downstream 2000 false Bd2: 46218274-46220273 Brachypodium distachyon
Bradi2g45987 5.0kb upstream 5.0kb upstream 15548 true Bd2: 46202726-46218273 Brachypodium distachyon
Bradi2g45987 5.0kb upstream 5.0kb upstream 5000 false Bd2: 46202726-46207725 Brachypodium distachyon
Bradi2g45987 5.0kb downstream 5.0kb downstream 15548 true Bd2: 46207726-46223273 Brachypodium distachyon
Bradi2g45987 5.0kb downstream 5.0kb downstream 5000 false Bd2: 46218274-46223273 Brachypodium distachyon
Bradi2g45987 10.0kb upstream 10.0kb upstream 20548 true Bd2: 46197726-46218273 Brachypodium distachyon
Bradi2g45987 10.0kb upstream 10.0kb upstream 10000 false Bd2: 46197726-46207725 Brachypodium distachyon
Bradi2g45987 10.0kb downstream 10.0kb downstream 20548 true Bd2: 46207726-46228273 Brachypodium distachyon
Bradi2g45987 10.0kb downstream 10.0kb downstream 10000 false Bd2: 46218274-46228273 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124576340 5269 Grass View MSA
122043235 5273 Angiosperm View MSA
121346488 5274 Embryophyte View MSA
123426973 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.23        
cufflinks 4.669        
cufflinks 5.044        
cufflinks 3.731        
cufflinks 2.097       Low
cufflinks 4.726        
cufflinks 4.537        
cufflinks 3.407        
cufflinks 4.404        
cufflinks 3.016        
cufflinks 4.307        
cufflinks 4.321        
cufflinks 4.123        
cufflinks 3.275        
cufflinks 2.503        
cufflinks 4.814        
cufflinks 2.575        
cufflinks 8.659       High
cufflinks 3.875        
cufflinks 1.608       Low
cufflinks 4.774        
cufflinks 5.123        
cufflinks 3.211        
cufflinks 3.947        
cufflinks 3.592        
cufflinks 4.67        
cufflinks 5.195        
cufflinks 4.99        
cufflinks 4.804        
cufflinks 4.49        

0 Strain