Gene : Bradi2g21217 B. distachyon v3.1
Defline:  (1 of 2) PTHR10145 - TRANSCRIPTION ELONGATION FACTOR SPT6 Genomic Order:  2705
Name:  ? Bradi2g21217 Secondary Identifier:  ? PAC:32773933
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g21217 0.5kb upstream 0.5kb upstream 8541 true Bd2: 18593662-18602202 Brachypodium distachyon
Bradi2g21217 0.5kb upstream 0.5kb upstream 500 false Bd2: 18601703-18602202 Brachypodium distachyon
Bradi2g21217 0.5kb downstream 0.5kb downstream 8541 true Bd2: 18593162-18601702 Brachypodium distachyon
Bradi2g21217 0.5kb downstream 0.5kb downstream 500 false Bd2: 18593162-18593661 Brachypodium distachyon
Bradi2g21217 1.0kb upstream 1.0kb upstream 9041 true Bd2: 18593662-18602702 Brachypodium distachyon
Bradi2g21217 1.0kb upstream 1.0kb upstream 1000 false Bd2: 18601703-18602702 Brachypodium distachyon
Bradi2g21217 1.0kb downstream 1.0kb downstream 9041 true Bd2: 18592662-18601702 Brachypodium distachyon
Bradi2g21217 1.0kb downstream 1.0kb downstream 1000 false Bd2: 18592662-18593661 Brachypodium distachyon
Bradi2g21217 2.0kb upstream 2.0kb upstream 10041 true Bd2: 18593662-18603702 Brachypodium distachyon
Bradi2g21217 2.0kb upstream 2.0kb upstream 2000 false Bd2: 18601703-18603702 Brachypodium distachyon
Bradi2g21217 2.0kb downstream 2.0kb downstream 10041 true Bd2: 18591662-18601702 Brachypodium distachyon
Bradi2g21217 2.0kb downstream 2.0kb downstream 2000 false Bd2: 18591662-18593661 Brachypodium distachyon
Bradi2g21217 5.0kb upstream 5.0kb upstream 13041 true Bd2: 18593662-18606702 Brachypodium distachyon
Bradi2g21217 5.0kb upstream 5.0kb upstream 5000 false Bd2: 18601703-18606702 Brachypodium distachyon
Bradi2g21217 5.0kb downstream 5.0kb downstream 13041 true Bd2: 18588662-18601702 Brachypodium distachyon
Bradi2g21217 5.0kb downstream 5.0kb downstream 5000 false Bd2: 18588662-18593661 Brachypodium distachyon
Bradi2g21217 10.0kb upstream 10.0kb upstream 18041 true Bd2: 18593662-18611702 Brachypodium distachyon
Bradi2g21217 10.0kb upstream 10.0kb upstream 10000 false Bd2: 18601703-18611702 Brachypodium distachyon
Bradi2g21217 10.0kb downstream 10.0kb downstream 18041 true Bd2: 18583662-18601702 Brachypodium distachyon
Bradi2g21217 10.0kb downstream 10.0kb downstream 10000 false Bd2: 18583662-18593661 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569366 5269 Grass View MSA
122044627 5273 Angiosperm View MSA
121347900 5274 Embryophyte View MSA
123426736 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.311        
cufflinks 10.638     High  
cufflinks 10.518     High  
cufflinks 7.009        
cufflinks 2.89       Low
cufflinks 9.281        
cufflinks 8.498        
cufflinks 6.956        
cufflinks 8.854        
cufflinks 4.646        
cufflinks 7.98        
cufflinks 10.717     High  
cufflinks 8.193     High  
cufflinks 5.515        
cufflinks 4.6        
cufflinks 9.44        
cufflinks 3.461       Low
cufflinks 13.36     High High
cufflinks 4.826        
cufflinks 2.858       Low
cufflinks 3.751        
cufflinks 11.45     High High
cufflinks 7.422        
cufflinks 6.927        
cufflinks 6.174        
cufflinks 7.89        
cufflinks 7.352        
cufflinks 7.692        
cufflinks 8.146        
cufflinks 11.246       High

0 Strain