Gene : Bradi1g46560 B. distachyon v3.1
Defline:  (1 of 58) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  5780
Name:  ? Bradi1g46560 Secondary Identifier:  ? PAC:32802080
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g46560 0.5kb upstream 0.5kb upstream 9504 true Bd1: 45257907-45267410 Brachypodium distachyon
Bradi1g46560 0.5kb upstream 0.5kb upstream 500 false Bd1: 45257907-45258406 Brachypodium distachyon
Bradi1g46560 0.5kb downstream 0.5kb downstream 9504 true Bd1: 45258407-45267910 Brachypodium distachyon
Bradi1g46560 0.5kb downstream 0.5kb downstream 500 false Bd1: 45267411-45267910 Brachypodium distachyon
Bradi1g46560 1.0kb upstream 1.0kb upstream 10004 true Bd1: 45257407-45267410 Brachypodium distachyon
Bradi1g46560 1.0kb upstream 1.0kb upstream 1000 false Bd1: 45257407-45258406 Brachypodium distachyon
Bradi1g46560 1.0kb downstream 1.0kb downstream 10004 true Bd1: 45258407-45268410 Brachypodium distachyon
Bradi1g46560 1.0kb downstream 1.0kb downstream 1000 false Bd1: 45267411-45268410 Brachypodium distachyon
Bradi1g46560 2.0kb upstream 2.0kb upstream 11004 true Bd1: 45256407-45267410 Brachypodium distachyon
Bradi1g46560 2.0kb upstream 2.0kb upstream 2000 false Bd1: 45256407-45258406 Brachypodium distachyon
Bradi1g46560 2.0kb downstream 2.0kb downstream 11004 true Bd1: 45258407-45269410 Brachypodium distachyon
Bradi1g46560 2.0kb downstream 2.0kb downstream 2000 false Bd1: 45267411-45269410 Brachypodium distachyon
Bradi1g46560 5.0kb upstream 5.0kb upstream 14004 true Bd1: 45253407-45267410 Brachypodium distachyon
Bradi1g46560 5.0kb upstream 5.0kb upstream 5000 false Bd1: 45253407-45258406 Brachypodium distachyon
Bradi1g46560 5.0kb downstream 5.0kb downstream 14004 true Bd1: 45258407-45272410 Brachypodium distachyon
Bradi1g46560 5.0kb downstream 5.0kb downstream 5000 false Bd1: 45267411-45272410 Brachypodium distachyon
Bradi1g46560 10.0kb upstream 10.0kb upstream 19004 true Bd1: 45248407-45267410 Brachypodium distachyon
Bradi1g46560 10.0kb upstream 10.0kb upstream 10000 false Bd1: 45248407-45258406 Brachypodium distachyon
Bradi1g46560 10.0kb downstream 10.0kb downstream 19004 true Bd1: 45258407-45277410 Brachypodium distachyon
Bradi1g46560 10.0kb downstream 10.0kb downstream 10000 false Bd1: 45267411-45277410 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124568247 5269 Grass View MSA
122047160 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121350621 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.364        
cufflinks 10.444     High High
cufflinks 5.083        
cufflinks 5.522        
cufflinks 0.196       Low
cufflinks 6.981       High
cufflinks 8.508       High
cufflinks 1.475        
cufflinks 3.364        
cufflinks 0.885        
cufflinks 2.968        
cufflinks 3.886        
cufflinks 2.852        
cufflinks 2.375        
cufflinks 0.523       Low
cufflinks 6.255        
cufflinks 0.944        
cufflinks 1.002        
cufflinks 0.983        
cufflinks 0.177       Low
cufflinks 0.937        
cufflinks 2.098        
cufflinks 1.384        
cufflinks 2.439        
cufflinks 4.919        
cufflinks 3.592        
cufflinks 3.692        
cufflinks 2.876        
cufflinks 2.318        
cufflinks 4.132        

0 Strain