Gene : VCL1 A. thaliana TAIR10
Primary Identifier:  ? AT2G38020 Defline:  (1 of 1) PTHR12811//PTHR12811:SF0 - VACUOLAR PROTEIN SORTING VPS16 // VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 16 HOMOLOG
Genomic Order:  3164 Name:  ? AT2G38020
Secondary Identifier:  ? PAC:19638838
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Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G38020 0.5kb upstream 0.5kb upstream 5303 true Chr2: 15909908-15915210 Arabidopsis thaliana
AT2G38020 0.5kb upstream 0.5kb upstream 500 false Chr2: 15914711-15915210 Arabidopsis thaliana
AT2G38020 0.5kb downstream 0.5kb downstream 5303 true Chr2: 15909408-15914710 Arabidopsis thaliana
AT2G38020 0.5kb downstream 0.5kb downstream 500 false Chr2: 15909408-15909907 Arabidopsis thaliana
AT2G38020 1.0kb upstream 1.0kb upstream 5803 true Chr2: 15909908-15915710 Arabidopsis thaliana
AT2G38020 1.0kb upstream 1.0kb upstream 1000 false Chr2: 15914711-15915710 Arabidopsis thaliana
AT2G38020 1.0kb downstream 1.0kb downstream 5803 true Chr2: 15908908-15914710 Arabidopsis thaliana
AT2G38020 1.0kb downstream 1.0kb downstream 1000 false Chr2: 15908908-15909907 Arabidopsis thaliana
AT2G38020 2.0kb upstream 2.0kb upstream 6803 true Chr2: 15909908-15916710 Arabidopsis thaliana
AT2G38020 2.0kb upstream 2.0kb upstream 2000 false Chr2: 15914711-15916710 Arabidopsis thaliana
AT2G38020 2.0kb downstream 2.0kb downstream 6803 true Chr2: 15907908-15914710 Arabidopsis thaliana
AT2G38020 2.0kb downstream 2.0kb downstream 2000 false Chr2: 15907908-15909907 Arabidopsis thaliana
AT2G38020 5.0kb upstream 5.0kb upstream 9803 true Chr2: 15909908-15919710 Arabidopsis thaliana
AT2G38020 5.0kb upstream 5.0kb upstream 5000 false Chr2: 15914711-15919710 Arabidopsis thaliana
AT2G38020 5.0kb downstream 5.0kb downstream 9803 true Chr2: 15904908-15914710 Arabidopsis thaliana
AT2G38020 5.0kb downstream 5.0kb downstream 5000 false Chr2: 15904908-15909907 Arabidopsis thaliana
AT2G38020 10.0kb upstream 10.0kb upstream 14803 true Chr2: 15909908-15924710 Arabidopsis thaliana
AT2G38020 10.0kb upstream 10.0kb upstream 10000 false Chr2: 15914711-15924710 Arabidopsis thaliana
AT2G38020 10.0kb downstream 10.0kb downstream 14803 true Chr2: 15899908-15914710 Arabidopsis thaliana
AT2G38020 10.0kb downstream 10.0kb downstream 10000 false Chr2: 15899908-15909907 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368930 5261 Brassicaceae View MSA
123832204 5264 Brassicales-Malvales View MSA
124341101 5266 SBM View MSA
124238112 5268 Malvidae View MSA
124062842 5270 Rosid View MSA
123745569 5271 Pentapetalae View MSA
122788117 5272 Eudicot View MSA
122043235 5273 Angiosperm View MSA
121346488 5274 Embryophyte View MSA
123426973 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.764        
cufflinks 5.936        
cufflinks 5.271       Low
cufflinks 6.089       High
cufflinks 5.78        
cufflinks 5.706        

0 Strain