Gene : CAX1 A. thaliana TAIR10
Primary Identifier:  ? AT2G38170 Defline:  (1 of 1) KOG1397 - Ca2+/H+ antiporter VCX1 and related proteins
Genomic Order:  3180 Name:  ? AT2G38170
Secondary Identifier:  ? PAC:19641371
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G38170 0.5kb upstream 0.5kb upstream 4696 true Chr2: 15989083-15993778 Arabidopsis thaliana
AT2G38170 0.5kb upstream 0.5kb upstream 500 false Chr2: 15993279-15993778 Arabidopsis thaliana
AT2G38170 0.5kb downstream 0.5kb downstream 4696 true Chr2: 15988583-15993278 Arabidopsis thaliana
AT2G38170 0.5kb downstream 0.5kb downstream 500 false Chr2: 15988583-15989082 Arabidopsis thaliana
AT2G38170 1.0kb upstream 1.0kb upstream 5196 true Chr2: 15989083-15994278 Arabidopsis thaliana
AT2G38170 1.0kb upstream 1.0kb upstream 1000 false Chr2: 15993279-15994278 Arabidopsis thaliana
AT2G38170 1.0kb downstream 1.0kb downstream 5196 true Chr2: 15988083-15993278 Arabidopsis thaliana
AT2G38170 1.0kb downstream 1.0kb downstream 1000 false Chr2: 15988083-15989082 Arabidopsis thaliana
AT2G38170 2.0kb upstream 2.0kb upstream 6196 true Chr2: 15989083-15995278 Arabidopsis thaliana
AT2G38170 2.0kb upstream 2.0kb upstream 2000 false Chr2: 15993279-15995278 Arabidopsis thaliana
AT2G38170 2.0kb downstream 2.0kb downstream 6196 true Chr2: 15987083-15993278 Arabidopsis thaliana
AT2G38170 2.0kb downstream 2.0kb downstream 2000 false Chr2: 15987083-15989082 Arabidopsis thaliana
AT2G38170 5.0kb upstream 5.0kb upstream 9196 true Chr2: 15989083-15998278 Arabidopsis thaliana
AT2G38170 5.0kb upstream 5.0kb upstream 5000 false Chr2: 15993279-15998278 Arabidopsis thaliana
AT2G38170 5.0kb downstream 5.0kb downstream 9196 true Chr2: 15984083-15993278 Arabidopsis thaliana
AT2G38170 5.0kb downstream 5.0kb downstream 5000 false Chr2: 15984083-15989082 Arabidopsis thaliana
AT2G38170 10.0kb upstream 10.0kb upstream 14196 true Chr2: 15989083-16003278 Arabidopsis thaliana
AT2G38170 10.0kb upstream 10.0kb upstream 10000 false Chr2: 15993279-16003278 Arabidopsis thaliana
AT2G38170 10.0kb downstream 10.0kb downstream 14196 true Chr2: 15979083-15993278 Arabidopsis thaliana
AT2G38170 10.0kb downstream 10.0kb downstream 10000 false Chr2: 15979083-15989082 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367790 5261 Brassicaceae View MSA
123838575 5264 Brassicales-Malvales View MSA
124344676 5266 SBM View MSA
124242914 5268 Malvidae View MSA
124065189 5270 Rosid View MSA
123739014 5271 Pentapetalae View MSA
122792056 5272 Eudicot View MSA
122048075 5273 Angiosperm View MSA
121310844 5274 Embryophyte View MSA
123427763 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.087       High
cufflinks 3.298        
cufflinks 17.227        
cufflinks 5.284        
cufflinks 17.146        
cufflinks 2.244       Low

0 Strain