Gene : CRF5 A. thaliana TAIR10
Primary Identifier:  ? AT2G46310 Defline:  (1 of 2) PTHR31194//PTHR31194:SF16 - SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR // SUBFAMILY NOT NAMED
Genomic Order:  4050 Name:  ? AT2G46310
Secondary Identifier:  ? PAC:19640302
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G46310 0.5kb upstream 0.5kb upstream 1855 true Chr2: 19011003-19012857 Arabidopsis thaliana
AT2G46310 0.5kb upstream 0.5kb upstream 500 false Chr2: 19011003-19011502 Arabidopsis thaliana
AT2G46310 0.5kb downstream 0.5kb downstream 1855 true Chr2: 19011503-19013357 Arabidopsis thaliana
AT2G46310 0.5kb downstream 0.5kb downstream 500 false Chr2: 19012858-19013357 Arabidopsis thaliana
AT2G46310 1.0kb upstream 1.0kb upstream 2355 true Chr2: 19010503-19012857 Arabidopsis thaliana
AT2G46310 1.0kb upstream 1.0kb upstream 1000 false Chr2: 19010503-19011502 Arabidopsis thaliana
AT2G46310 1.0kb downstream 1.0kb downstream 2355 true Chr2: 19011503-19013857 Arabidopsis thaliana
AT2G46310 1.0kb downstream 1.0kb downstream 1000 false Chr2: 19012858-19013857 Arabidopsis thaliana
AT2G46310 2.0kb upstream 2.0kb upstream 3355 true Chr2: 19009503-19012857 Arabidopsis thaliana
AT2G46310 2.0kb upstream 2.0kb upstream 2000 false Chr2: 19009503-19011502 Arabidopsis thaliana
AT2G46310 2.0kb downstream 2.0kb downstream 3355 true Chr2: 19011503-19014857 Arabidopsis thaliana
AT2G46310 2.0kb downstream 2.0kb downstream 2000 false Chr2: 19012858-19014857 Arabidopsis thaliana
AT2G46310 5.0kb upstream 5.0kb upstream 6355 true Chr2: 19006503-19012857 Arabidopsis thaliana
AT2G46310 5.0kb upstream 5.0kb upstream 5000 false Chr2: 19006503-19011502 Arabidopsis thaliana
AT2G46310 5.0kb downstream 5.0kb downstream 6355 true Chr2: 19011503-19017857 Arabidopsis thaliana
AT2G46310 5.0kb downstream 5.0kb downstream 5000 false Chr2: 19012858-19017857 Arabidopsis thaliana
AT2G46310 10.0kb upstream 10.0kb upstream 11355 true Chr2: 19001503-19012857 Arabidopsis thaliana
AT2G46310 10.0kb upstream 10.0kb upstream 10000 false Chr2: 19001503-19011502 Arabidopsis thaliana
AT2G46310 10.0kb downstream 10.0kb downstream 11355 true Chr2: 19011503-19022857 Arabidopsis thaliana
AT2G46310 10.0kb downstream 10.0kb downstream 10000 false Chr2: 19012858-19022857 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376659 5261 Brassicaceae View MSA
123838467 5264 Brassicales-Malvales View MSA
124350812 5266 SBM View MSA
124241460 5268 Malvidae View MSA
124072043 5270 Rosid View MSA
123744943 5271 Pentapetalae View MSA
122797737 5272 Eudicot View MSA
122048577 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.585        
cufflinks 6.361        
cufflinks 2.771        
cufflinks 9.17       High
cufflinks 2.393       Low
cufflinks 6.913        

0 Strain