Gene : AT2G42450 A. thaliana TAIR10
Defline:  (1 of 7) KOG2088 - Predicted lipase/calmodulin-binding heat-shock protein Genomic Order:  3645
Name:  ? AT2G42450 Secondary Identifier:  ? PAC:19638403
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G42450 0.5kb upstream 0.5kb upstream 3267 true Chr2: 17672253-17675519 Arabidopsis thaliana
AT2G42450 0.5kb upstream 0.5kb upstream 500 false Chr2: 17675020-17675519 Arabidopsis thaliana
AT2G42450 0.5kb downstream 0.5kb downstream 3267 true Chr2: 17671753-17675019 Arabidopsis thaliana
AT2G42450 0.5kb downstream 0.5kb downstream 500 false Chr2: 17671753-17672252 Arabidopsis thaliana
AT2G42450 1.0kb upstream 1.0kb upstream 3767 true Chr2: 17672253-17676019 Arabidopsis thaliana
AT2G42450 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17675020-17676019 Arabidopsis thaliana
AT2G42450 1.0kb downstream 1.0kb downstream 3767 true Chr2: 17671253-17675019 Arabidopsis thaliana
AT2G42450 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17671253-17672252 Arabidopsis thaliana
AT2G42450 2.0kb upstream 2.0kb upstream 4767 true Chr2: 17672253-17677019 Arabidopsis thaliana
AT2G42450 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17675020-17677019 Arabidopsis thaliana
AT2G42450 2.0kb downstream 2.0kb downstream 4767 true Chr2: 17670253-17675019 Arabidopsis thaliana
AT2G42450 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17670253-17672252 Arabidopsis thaliana
AT2G42450 5.0kb upstream 5.0kb upstream 7767 true Chr2: 17672253-17680019 Arabidopsis thaliana
AT2G42450 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17675020-17680019 Arabidopsis thaliana
AT2G42450 5.0kb downstream 5.0kb downstream 7767 true Chr2: 17667253-17675019 Arabidopsis thaliana
AT2G42450 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17667253-17672252 Arabidopsis thaliana
AT2G42450 10.0kb upstream 10.0kb upstream 12767 true Chr2: 17672253-17685019 Arabidopsis thaliana
AT2G42450 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17675020-17685019 Arabidopsis thaliana
AT2G42450 10.0kb downstream 10.0kb downstream 12767 true Chr2: 17662253-17675019 Arabidopsis thaliana
AT2G42450 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17662253-17672252 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374344 5261 Brassicaceae View MSA
123831771 5264 Brassicales-Malvales View MSA
124339726 5266 SBM View MSA
124240826 5268 Malvidae View MSA
124065211 5270 Rosid View MSA
123745053 5271 Pentapetalae View MSA
122789977 5272 Eudicot View MSA
122044496 5273 Angiosperm View MSA
121344819 5274 Embryophyte View MSA
123427185 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.894       Low
cufflinks 5.034       High
cufflinks 2.354        
cufflinks 4.396        
cufflinks 1.905       Low
cufflinks 4.487        

0 Strain