Gene : AT2G42300 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12565//PTHR12565:SF112 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BHLH48-RELATED Genomic Order:  3630
Name:  ? AT2G42300 Secondary Identifier:  ? PAC:19642438
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G42300 0.5kb upstream 0.5kb upstream 4186 true Chr2: 17620656-17624841 Arabidopsis thaliana
AT2G42300 0.5kb upstream 0.5kb upstream 500 false Chr2: 17620656-17621155 Arabidopsis thaliana
AT2G42300 0.5kb downstream 0.5kb downstream 4186 true Chr2: 17621156-17625341 Arabidopsis thaliana
AT2G42300 0.5kb downstream 0.5kb downstream 500 false Chr2: 17624842-17625341 Arabidopsis thaliana
AT2G42300 1.0kb upstream 1.0kb upstream 4686 true Chr2: 17620156-17624841 Arabidopsis thaliana
AT2G42300 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17620156-17621155 Arabidopsis thaliana
AT2G42300 1.0kb downstream 1.0kb downstream 4686 true Chr2: 17621156-17625841 Arabidopsis thaliana
AT2G42300 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17624842-17625841 Arabidopsis thaliana
AT2G42300 2.0kb upstream 2.0kb upstream 5686 true Chr2: 17619156-17624841 Arabidopsis thaliana
AT2G42300 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17619156-17621155 Arabidopsis thaliana
AT2G42300 2.0kb downstream 2.0kb downstream 5686 true Chr2: 17621156-17626841 Arabidopsis thaliana
AT2G42300 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17624842-17626841 Arabidopsis thaliana
AT2G42300 5.0kb upstream 5.0kb upstream 8686 true Chr2: 17616156-17624841 Arabidopsis thaliana
AT2G42300 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17616156-17621155 Arabidopsis thaliana
AT2G42300 5.0kb downstream 5.0kb downstream 8686 true Chr2: 17621156-17629841 Arabidopsis thaliana
AT2G42300 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17624842-17629841 Arabidopsis thaliana
AT2G42300 10.0kb upstream 10.0kb upstream 13686 true Chr2: 17611156-17624841 Arabidopsis thaliana
AT2G42300 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17611156-17621155 Arabidopsis thaliana
AT2G42300 10.0kb downstream 10.0kb downstream 13686 true Chr2: 17621156-17634841 Arabidopsis thaliana
AT2G42300 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17624842-17634841 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379284 5261 Brassicaceae View MSA
123839829 5264 Brassicales-Malvales View MSA
124338408 5266 SBM View MSA
124240719 5268 Malvidae View MSA
124063738 5270 Rosid View MSA
123737117 5271 Pentapetalae View MSA
122769887 5272 Eudicot View MSA
122044005 5273 Angiosperm View MSA
121310224 5274 Embryophyte View MSA
123347772 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.705       High
cufflinks 2.465        
cufflinks 2.986        
cufflinks 2.092       Low
cufflinks 2.785        
cufflinks 2.988        

0 Strain