Gene : AT2G43180 A. thaliana TAIR10
Defline:  (1 of 1) 4.1.3.32 - 2,3-dimethylmalate lyase / (2R,3S)-2,3-dimethylmalate pyruvate-lyase Genomic Order:  3719
Name:  ? AT2G43180 Secondary Identifier:  ? PAC:19640151
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G43180 0.5kb upstream 0.5kb upstream 2833 true Chr2: 17953497-17956329 Arabidopsis thaliana
AT2G43180 0.5kb upstream 0.5kb upstream 500 false Chr2: 17955830-17956329 Arabidopsis thaliana
AT2G43180 0.5kb downstream 0.5kb downstream 2833 true Chr2: 17952997-17955829 Arabidopsis thaliana
AT2G43180 0.5kb downstream 0.5kb downstream 500 false Chr2: 17952997-17953496 Arabidopsis thaliana
AT2G43180 1.0kb upstream 1.0kb upstream 3333 true Chr2: 17953497-17956829 Arabidopsis thaliana
AT2G43180 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17955830-17956829 Arabidopsis thaliana
AT2G43180 1.0kb downstream 1.0kb downstream 3333 true Chr2: 17952497-17955829 Arabidopsis thaliana
AT2G43180 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17952497-17953496 Arabidopsis thaliana
AT2G43180 2.0kb upstream 2.0kb upstream 4333 true Chr2: 17953497-17957829 Arabidopsis thaliana
AT2G43180 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17955830-17957829 Arabidopsis thaliana
AT2G43180 2.0kb downstream 2.0kb downstream 4333 true Chr2: 17951497-17955829 Arabidopsis thaliana
AT2G43180 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17951497-17953496 Arabidopsis thaliana
AT2G43180 5.0kb upstream 5.0kb upstream 7333 true Chr2: 17953497-17960829 Arabidopsis thaliana
AT2G43180 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17955830-17960829 Arabidopsis thaliana
AT2G43180 5.0kb downstream 5.0kb downstream 7333 true Chr2: 17948497-17955829 Arabidopsis thaliana
AT2G43180 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17948497-17953496 Arabidopsis thaliana
AT2G43180 10.0kb upstream 10.0kb upstream 12333 true Chr2: 17953497-17965829 Arabidopsis thaliana
AT2G43180 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17955830-17965829 Arabidopsis thaliana
AT2G43180 10.0kb downstream 10.0kb downstream 12333 true Chr2: 17943497-17955829 Arabidopsis thaliana
AT2G43180 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17943497-17953496 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371270 5261 Brassicaceae View MSA
123830061 5264 Brassicales-Malvales View MSA
124340422 5266 SBM View MSA
124239878 5268 Malvidae View MSA
124066226 5270 Rosid View MSA
123747963 5271 Pentapetalae View MSA
122789169 5272 Eudicot View MSA
122045509 5273 Angiosperm View MSA
121345252 5274 Embryophyte View MSA
123424326 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.825        
cufflinks 0.569        
cufflinks 2.18       High
cufflinks 0.708        
cufflinks 1.979        
cufflinks 0.523       Low

0 Strain