Gene : AT2G21390 A. thaliana TAIR10
Defline:  (1 of 2) K05236 - coatomer protein complex, subunit alpha (xenin) (COPA) Genomic Order:  1398
Name:  ? AT2G21390 Secondary Identifier:  ? PAC:19638044
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G21390 0.5kb upstream 0.5kb upstream 5373 true Chr2: 9151506-9156878 Arabidopsis thaliana
AT2G21390 0.5kb upstream 0.5kb upstream 500 false Chr2: 9151506-9152005 Arabidopsis thaliana
AT2G21390 0.5kb downstream 0.5kb downstream 5373 true Chr2: 9152006-9157378 Arabidopsis thaliana
AT2G21390 0.5kb downstream 0.5kb downstream 500 false Chr2: 9156879-9157378 Arabidopsis thaliana
AT2G21390 1.0kb upstream 1.0kb upstream 5873 true Chr2: 9151006-9156878 Arabidopsis thaliana
AT2G21390 1.0kb upstream 1.0kb upstream 1000 false Chr2: 9151006-9152005 Arabidopsis thaliana
AT2G21390 1.0kb downstream 1.0kb downstream 5873 true Chr2: 9152006-9157878 Arabidopsis thaliana
AT2G21390 1.0kb downstream 1.0kb downstream 1000 false Chr2: 9156879-9157878 Arabidopsis thaliana
AT2G21390 2.0kb upstream 2.0kb upstream 6873 true Chr2: 9150006-9156878 Arabidopsis thaliana
AT2G21390 2.0kb upstream 2.0kb upstream 2000 false Chr2: 9150006-9152005 Arabidopsis thaliana
AT2G21390 2.0kb downstream 2.0kb downstream 6873 true Chr2: 9152006-9158878 Arabidopsis thaliana
AT2G21390 2.0kb downstream 2.0kb downstream 2000 false Chr2: 9156879-9158878 Arabidopsis thaliana
AT2G21390 5.0kb upstream 5.0kb upstream 9873 true Chr2: 9147006-9156878 Arabidopsis thaliana
AT2G21390 5.0kb upstream 5.0kb upstream 5000 false Chr2: 9147006-9152005 Arabidopsis thaliana
AT2G21390 5.0kb downstream 5.0kb downstream 9873 true Chr2: 9152006-9161878 Arabidopsis thaliana
AT2G21390 5.0kb downstream 5.0kb downstream 5000 false Chr2: 9156879-9161878 Arabidopsis thaliana
AT2G21390 10.0kb upstream 10.0kb upstream 14873 true Chr2: 9142006-9156878 Arabidopsis thaliana
AT2G21390 10.0kb upstream 10.0kb upstream 10000 false Chr2: 9142006-9152005 Arabidopsis thaliana
AT2G21390 10.0kb downstream 10.0kb downstream 14873 true Chr2: 9152006-9166878 Arabidopsis thaliana
AT2G21390 10.0kb downstream 10.0kb downstream 10000 false Chr2: 9156879-9166878 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378022 5261 Brassicaceae View MSA
123841029 5264 Brassicales-Malvales View MSA
124337320 5266 SBM View MSA
124243842 5268 Malvidae View MSA
124068022 5270 Rosid View MSA
123750852 5271 Pentapetalae View MSA
122787725 5272 Eudicot View MSA
122046406 5273 Angiosperm View MSA
121345159 5274 Embryophyte View MSA
123428224 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.385     High  
cufflinks 61.678     High  
cufflinks 38.427     High Low
cufflinks 68.7     High  
cufflinks 40.744     High  
cufflinks 75.942     High High

0 Strain