Gene : CYP5 A. thaliana TAIR10
Primary Identifier:  ? AT2G29960 Defline:  (1 of 3) PTHR11071//PTHR11071:SF291 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE // SUBFAMILY NOT NAMED
Genomic Order:  2286 Name:  ? AT2G29960
Secondary Identifier:  ? PAC:19640539
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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G29960 0.5kb upstream 0.5kb upstream 2047 true Chr2: 12769033-12771079 Arabidopsis thaliana
AT2G29960 0.5kb upstream 0.5kb upstream 500 false Chr2: 12770580-12771079 Arabidopsis thaliana
AT2G29960 0.5kb downstream 0.5kb downstream 2047 true Chr2: 12768533-12770579 Arabidopsis thaliana
AT2G29960 0.5kb downstream 0.5kb downstream 500 false Chr2: 12768533-12769032 Arabidopsis thaliana
AT2G29960 1.0kb upstream 1.0kb upstream 2547 true Chr2: 12769033-12771579 Arabidopsis thaliana
AT2G29960 1.0kb upstream 1.0kb upstream 1000 false Chr2: 12770580-12771579 Arabidopsis thaliana
AT2G29960 1.0kb downstream 1.0kb downstream 2547 true Chr2: 12768033-12770579 Arabidopsis thaliana
AT2G29960 1.0kb downstream 1.0kb downstream 1000 false Chr2: 12768033-12769032 Arabidopsis thaliana
AT2G29960 2.0kb upstream 2.0kb upstream 3547 true Chr2: 12769033-12772579 Arabidopsis thaliana
AT2G29960 2.0kb upstream 2.0kb upstream 2000 false Chr2: 12770580-12772579 Arabidopsis thaliana
AT2G29960 2.0kb downstream 2.0kb downstream 3547 true Chr2: 12767033-12770579 Arabidopsis thaliana
AT2G29960 2.0kb downstream 2.0kb downstream 2000 false Chr2: 12767033-12769032 Arabidopsis thaliana
AT2G29960 5.0kb upstream 5.0kb upstream 6547 true Chr2: 12769033-12775579 Arabidopsis thaliana
AT2G29960 5.0kb upstream 5.0kb upstream 5000 false Chr2: 12770580-12775579 Arabidopsis thaliana
AT2G29960 5.0kb downstream 5.0kb downstream 6547 true Chr2: 12764033-12770579 Arabidopsis thaliana
AT2G29960 5.0kb downstream 5.0kb downstream 5000 false Chr2: 12764033-12769032 Arabidopsis thaliana
AT2G29960 10.0kb upstream 10.0kb upstream 11547 true Chr2: 12769033-12780579 Arabidopsis thaliana
AT2G29960 10.0kb upstream 10.0kb upstream 10000 false Chr2: 12770580-12780579 Arabidopsis thaliana
AT2G29960 10.0kb downstream 10.0kb downstream 11547 true Chr2: 12759033-12770579 Arabidopsis thaliana
AT2G29960 10.0kb downstream 10.0kb downstream 10000 false Chr2: 12759033-12769032 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370188 5261 Brassicaceae View MSA
123835455 5264 Brassicales-Malvales View MSA
124342562 5266 SBM View MSA
124240718 5268 Malvidae View MSA
124063995 5270 Rosid View MSA
123745258 5271 Pentapetalae View MSA
122785870 5272 Eudicot View MSA
122041792 5273 Angiosperm View MSA
123428973 5275 Viridiplantae View MSA
121346769 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.962        
cufflinks 32.752     High  
cufflinks 13.784        
cufflinks 31.338     High  
cufflinks 12.82       Low
cufflinks 34.995     High High

0 Strain