Gene : PMDH1 A. thaliana TAIR10
Primary Identifier:  ? AT2G22780 Defline:  (1 of 1) PTHR11540:SF27 - MALATE DEHYDROGENASE, GLYOXYSOMAL-RELATED
Genomic Order:  1535 Name:  ? AT2G22780
Secondary Identifier:  ? PAC:19643592
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Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana GLUCONEO-PWY Arabidopsis thaliana pathologic  
Athaliana GLYOXYLATE-BYPASS Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY-561 Arabidopsis thaliana pathologic  
Athaliana PWY-5690 Arabidopsis thaliana pathologic  
Athaliana PWY66-399 Arabidopsis thaliana pathologic  
Athaliana PWY-7115 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G22780 0.5kb upstream 0.5kb upstream 3240 true Chr2: 9689415-9692654 Arabidopsis thaliana
AT2G22780 0.5kb upstream 0.5kb upstream 500 false Chr2: 9692155-9692654 Arabidopsis thaliana
AT2G22780 0.5kb downstream 0.5kb downstream 3240 true Chr2: 9688915-9692154 Arabidopsis thaliana
AT2G22780 0.5kb downstream 0.5kb downstream 500 false Chr2: 9688915-9689414 Arabidopsis thaliana
AT2G22780 1.0kb upstream 1.0kb upstream 3740 true Chr2: 9689415-9693154 Arabidopsis thaliana
AT2G22780 1.0kb upstream 1.0kb upstream 1000 false Chr2: 9692155-9693154 Arabidopsis thaliana
AT2G22780 1.0kb downstream 1.0kb downstream 3740 true Chr2: 9688415-9692154 Arabidopsis thaliana
AT2G22780 1.0kb downstream 1.0kb downstream 1000 false Chr2: 9688415-9689414 Arabidopsis thaliana
AT2G22780 2.0kb upstream 2.0kb upstream 4740 true Chr2: 9689415-9694154 Arabidopsis thaliana
AT2G22780 2.0kb upstream 2.0kb upstream 2000 false Chr2: 9692155-9694154 Arabidopsis thaliana
AT2G22780 2.0kb downstream 2.0kb downstream 4740 true Chr2: 9687415-9692154 Arabidopsis thaliana
AT2G22780 2.0kb downstream 2.0kb downstream 2000 false Chr2: 9687415-9689414 Arabidopsis thaliana
AT2G22780 5.0kb upstream 5.0kb upstream 7740 true Chr2: 9689415-9697154 Arabidopsis thaliana
AT2G22780 5.0kb upstream 5.0kb upstream 5000 false Chr2: 9692155-9697154 Arabidopsis thaliana
AT2G22780 5.0kb downstream 5.0kb downstream 7740 true Chr2: 9684415-9692154 Arabidopsis thaliana
AT2G22780 5.0kb downstream 5.0kb downstream 5000 false Chr2: 9684415-9689414 Arabidopsis thaliana
AT2G22780 10.0kb upstream 10.0kb upstream 12740 true Chr2: 9689415-9702154 Arabidopsis thaliana
AT2G22780 10.0kb upstream 10.0kb upstream 10000 false Chr2: 9692155-9702154 Arabidopsis thaliana
AT2G22780 10.0kb downstream 10.0kb downstream 12740 true Chr2: 9679415-9692154 Arabidopsis thaliana
AT2G22780 10.0kb downstream 10.0kb downstream 10000 false Chr2: 9679415-9689414 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369171 5261 Brassicaceae View MSA
123830380 5264 Brassicales-Malvales View MSA
124348581 5266 SBM View MSA
124236845 5268 Malvidae View MSA
124072228 5270 Rosid View MSA
123748567 5271 Pentapetalae View MSA
122789839 5272 Eudicot View MSA
122041534 5273 Angiosperm View MSA
121344614 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.8     High  
cufflinks 49.499     High High
cufflinks 34.055     High Low
cufflinks 45.576     High  
cufflinks 36.42     High  
cufflinks 50.154     High High

0 Strain