Gene : CSN5B A. thaliana TAIR10
Primary Identifier:  ? AT1G71230 Defline:  (1 of 2) K09613 - COP9 signalosome complex subunit 5 [EC:3.4.-.-] (COPS5, CSN5)
Genomic Order:  6087 Name:  ? AT1G71230
Secondary Identifier:  ? PAC:19655378
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G71230 0.5kb upstream 0.5kb upstream 2436 true Chr1: 26851961-26854396 Arabidopsis thaliana
AT1G71230 0.5kb upstream 0.5kb upstream 500 false Chr1: 26851961-26852460 Arabidopsis thaliana
AT1G71230 0.5kb downstream 0.5kb downstream 2436 true Chr1: 26852461-26854896 Arabidopsis thaliana
AT1G71230 0.5kb downstream 0.5kb downstream 500 false Chr1: 26854397-26854896 Arabidopsis thaliana
AT1G71230 1.0kb upstream 1.0kb upstream 2936 true Chr1: 26851461-26854396 Arabidopsis thaliana
AT1G71230 1.0kb upstream 1.0kb upstream 1000 false Chr1: 26851461-26852460 Arabidopsis thaliana
AT1G71230 1.0kb downstream 1.0kb downstream 2936 true Chr1: 26852461-26855396 Arabidopsis thaliana
AT1G71230 1.0kb downstream 1.0kb downstream 1000 false Chr1: 26854397-26855396 Arabidopsis thaliana
AT1G71230 2.0kb upstream 2.0kb upstream 3936 true Chr1: 26850461-26854396 Arabidopsis thaliana
AT1G71230 2.0kb upstream 2.0kb upstream 2000 false Chr1: 26850461-26852460 Arabidopsis thaliana
AT1G71230 2.0kb downstream 2.0kb downstream 3936 true Chr1: 26852461-26856396 Arabidopsis thaliana
AT1G71230 2.0kb downstream 2.0kb downstream 2000 false Chr1: 26854397-26856396 Arabidopsis thaliana
AT1G71230 5.0kb upstream 5.0kb upstream 6936 true Chr1: 26847461-26854396 Arabidopsis thaliana
AT1G71230 5.0kb upstream 5.0kb upstream 5000 false Chr1: 26847461-26852460 Arabidopsis thaliana
AT1G71230 5.0kb downstream 5.0kb downstream 6936 true Chr1: 26852461-26859396 Arabidopsis thaliana
AT1G71230 5.0kb downstream 5.0kb downstream 5000 false Chr1: 26854397-26859396 Arabidopsis thaliana
AT1G71230 10.0kb upstream 10.0kb upstream 11936 true Chr1: 26842461-26854396 Arabidopsis thaliana
AT1G71230 10.0kb upstream 10.0kb upstream 10000 false Chr1: 26842461-26852460 Arabidopsis thaliana
AT1G71230 10.0kb downstream 10.0kb downstream 11936 true Chr1: 26852461-26864396 Arabidopsis thaliana
AT1G71230 10.0kb downstream 10.0kb downstream 10000 false Chr1: 26854397-26864396 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376767 5261 Brassicaceae View MSA
123837329 5264 Brassicales-Malvales View MSA
124345719 5266 SBM View MSA
124247743 5268 Malvidae View MSA
124062385 5270 Rosid View MSA
123748125 5271 Pentapetalae View MSA
122791639 5272 Eudicot View MSA
122043693 5273 Angiosperm View MSA
121347496 5274 Embryophyte View MSA
123424807 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.037        
cufflinks 7.199        
cufflinks 2.09       Low
cufflinks 6.093        
cufflinks 1.853       Low
cufflinks 7.725       High

0 Strain