Gene : BCDH BETA1 A. thaliana TAIR10
Primary Identifier:  ? AT1G55510 Defline:  (1 of 2) K00167 - 2-oxoisovalerate dehydrogenase E1 component beta subunit (BCKDHB, bkdA2)
Genomic Order:  4605 Name:  ? AT1G55510
Secondary Identifier:  ? PAC:19653921
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5046 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55510 0.5kb upstream 0.5kb upstream 2867 true Chr1: 20722802-20725668 Arabidopsis thaliana
AT1G55510 0.5kb upstream 0.5kb upstream 500 false Chr1: 20722802-20723301 Arabidopsis thaliana
AT1G55510 0.5kb downstream 0.5kb downstream 2867 true Chr1: 20723302-20726168 Arabidopsis thaliana
AT1G55510 0.5kb downstream 0.5kb downstream 500 false Chr1: 20725669-20726168 Arabidopsis thaliana
AT1G55510 1.0kb upstream 1.0kb upstream 3367 true Chr1: 20722302-20725668 Arabidopsis thaliana
AT1G55510 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20722302-20723301 Arabidopsis thaliana
AT1G55510 1.0kb downstream 1.0kb downstream 3367 true Chr1: 20723302-20726668 Arabidopsis thaliana
AT1G55510 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20725669-20726668 Arabidopsis thaliana
AT1G55510 2.0kb upstream 2.0kb upstream 4367 true Chr1: 20721302-20725668 Arabidopsis thaliana
AT1G55510 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20721302-20723301 Arabidopsis thaliana
AT1G55510 2.0kb downstream 2.0kb downstream 4367 true Chr1: 20723302-20727668 Arabidopsis thaliana
AT1G55510 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20725669-20727668 Arabidopsis thaliana
AT1G55510 5.0kb upstream 5.0kb upstream 7367 true Chr1: 20718302-20725668 Arabidopsis thaliana
AT1G55510 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20718302-20723301 Arabidopsis thaliana
AT1G55510 5.0kb downstream 5.0kb downstream 7367 true Chr1: 20723302-20730668 Arabidopsis thaliana
AT1G55510 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20725669-20730668 Arabidopsis thaliana
AT1G55510 10.0kb upstream 10.0kb upstream 12367 true Chr1: 20713302-20725668 Arabidopsis thaliana
AT1G55510 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20713302-20723301 Arabidopsis thaliana
AT1G55510 10.0kb downstream 10.0kb downstream 12367 true Chr1: 20723302-20735668 Arabidopsis thaliana
AT1G55510 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20725669-20735668 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377784 5261 Brassicaceae View MSA
123830123 5264 Brassicales-Malvales View MSA
124341245 5266 SBM View MSA
124243640 5268 Malvidae View MSA
124067270 5270 Rosid View MSA
123743874 5271 Pentapetalae View MSA
122787684 5272 Eudicot View MSA
122046166 5273 Angiosperm View MSA
121344271 5274 Embryophyte View MSA
123424966 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.672        
cufflinks 6.846        
cufflinks 8.267        
cufflinks 8.469        
cufflinks 9.617       High
cufflinks 4.014       Low

0 Strain