Gene : XF1 A. thaliana TAIR10
Primary Identifier:  ? AT1G58440 Defline:  (1 of 6) K00511 - squalene monooxygenase (SQLE, ERG1)
Genomic Order:  4824 Name:  ? AT1G58440
Secondary Identifier:  ? PAC:19653299
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-2541 Arabidopsis thaliana pathologic  
Athaliana PWY-5670 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G58440 0.5kb upstream 0.5kb upstream 3949 true Chr1: 21713842-21717790 Arabidopsis thaliana
AT1G58440 0.5kb upstream 0.5kb upstream 500 false Chr1: 21717291-21717790 Arabidopsis thaliana
AT1G58440 0.5kb downstream 0.5kb downstream 3949 true Chr1: 21713342-21717290 Arabidopsis thaliana
AT1G58440 0.5kb downstream 0.5kb downstream 500 false Chr1: 21713342-21713841 Arabidopsis thaliana
AT1G58440 1.0kb upstream 1.0kb upstream 4449 true Chr1: 21713842-21718290 Arabidopsis thaliana
AT1G58440 1.0kb upstream 1.0kb upstream 1000 false Chr1: 21717291-21718290 Arabidopsis thaliana
AT1G58440 1.0kb downstream 1.0kb downstream 4449 true Chr1: 21712842-21717290 Arabidopsis thaliana
AT1G58440 1.0kb downstream 1.0kb downstream 1000 false Chr1: 21712842-21713841 Arabidopsis thaliana
AT1G58440 2.0kb upstream 2.0kb upstream 5449 true Chr1: 21713842-21719290 Arabidopsis thaliana
AT1G58440 2.0kb upstream 2.0kb upstream 2000 false Chr1: 21717291-21719290 Arabidopsis thaliana
AT1G58440 2.0kb downstream 2.0kb downstream 5449 true Chr1: 21711842-21717290 Arabidopsis thaliana
AT1G58440 2.0kb downstream 2.0kb downstream 2000 false Chr1: 21711842-21713841 Arabidopsis thaliana
AT1G58440 5.0kb upstream 5.0kb upstream 8449 true Chr1: 21713842-21722290 Arabidopsis thaliana
AT1G58440 5.0kb upstream 5.0kb upstream 5000 false Chr1: 21717291-21722290 Arabidopsis thaliana
AT1G58440 5.0kb downstream 5.0kb downstream 8449 true Chr1: 21708842-21717290 Arabidopsis thaliana
AT1G58440 5.0kb downstream 5.0kb downstream 5000 false Chr1: 21708842-21713841 Arabidopsis thaliana
AT1G58440 10.0kb upstream 10.0kb upstream 13449 true Chr1: 21713842-21727290 Arabidopsis thaliana
AT1G58440 10.0kb upstream 10.0kb upstream 10000 false Chr1: 21717291-21727290 Arabidopsis thaliana
AT1G58440 10.0kb downstream 10.0kb downstream 13449 true Chr1: 21703842-21717290 Arabidopsis thaliana
AT1G58440 10.0kb downstream 10.0kb downstream 10000 false Chr1: 21703842-21713841 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371858 5261 Brassicaceae View MSA
123838211 5264 Brassicales-Malvales View MSA
124342457 5266 SBM View MSA
124254451 5268 Malvidae View MSA
124072398 5270 Rosid View MSA
123747368 5271 Pentapetalae View MSA
122788930 5272 Eudicot View MSA
122042003 5273 Angiosperm View MSA
121344187 5274 Embryophyte View MSA
123428498 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.067        
cufflinks 7.29        
cufflinks 8.544        
cufflinks 9.556        
cufflinks 5.744       Low
cufflinks 11.808       High

0 Strain