Gene : RPS17 A. thaliana TAIR10
Primary Identifier:  ? AT1G79850 Defline:  (1 of 1) PTHR10744//PTHR10744:SF7 - 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER // 30S RIBOSOMAL PROTEIN S17, CHLOROPLASTIC
Genomic Order:  6962 Name:  ? AT1G79850
Secondary Identifier:  ? PAC:19651512
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Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G79850 0.5kb upstream 0.5kb upstream 1210 true Chr1: 30041243-30042452 Arabidopsis thaliana
AT1G79850 0.5kb upstream 0.5kb upstream 500 false Chr1: 30041953-30042452 Arabidopsis thaliana
AT1G79850 0.5kb downstream 0.5kb downstream 1210 true Chr1: 30040743-30041952 Arabidopsis thaliana
AT1G79850 0.5kb downstream 0.5kb downstream 500 false Chr1: 30040743-30041242 Arabidopsis thaliana
AT1G79850 1.0kb upstream 1.0kb upstream 1710 true Chr1: 30041243-30042952 Arabidopsis thaliana
AT1G79850 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30041953-30042952 Arabidopsis thaliana
AT1G79850 1.0kb downstream 1.0kb downstream 1710 true Chr1: 30040243-30041952 Arabidopsis thaliana
AT1G79850 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30040243-30041242 Arabidopsis thaliana
AT1G79850 2.0kb upstream 2.0kb upstream 2710 true Chr1: 30041243-30043952 Arabidopsis thaliana
AT1G79850 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30041953-30043952 Arabidopsis thaliana
AT1G79850 2.0kb downstream 2.0kb downstream 2710 true Chr1: 30039243-30041952 Arabidopsis thaliana
AT1G79850 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30039243-30041242 Arabidopsis thaliana
AT1G79850 5.0kb upstream 5.0kb upstream 5710 true Chr1: 30041243-30046952 Arabidopsis thaliana
AT1G79850 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30041953-30046952 Arabidopsis thaliana
AT1G79850 5.0kb downstream 5.0kb downstream 5710 true Chr1: 30036243-30041952 Arabidopsis thaliana
AT1G79850 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30036243-30041242 Arabidopsis thaliana
AT1G79850 10.0kb upstream 10.0kb upstream 10710 true Chr1: 30041243-30051952 Arabidopsis thaliana
AT1G79850 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30041953-30051952 Arabidopsis thaliana
AT1G79850 10.0kb downstream 10.0kb downstream 10710 true Chr1: 30031243-30041952 Arabidopsis thaliana
AT1G79850 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30031243-30041242 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366713 5261 Brassicaceae View MSA
123832399 5264 Brassicales-Malvales View MSA
124346149 5266 SBM View MSA
124253303 5268 Malvidae View MSA
124063542 5270 Rosid View MSA
123744369 5271 Pentapetalae View MSA
122786157 5272 Eudicot View MSA
122045320 5273 Angiosperm View MSA
121347348 5274 Embryophyte View MSA
123424165 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 231.554     High  
cufflinks 24.083        
cufflinks 301.699     High High
cufflinks 17.304       Low
cufflinks 214.284     High  
cufflinks 23.647        

0 Strain