Gene : LHCB2.2 A. thaliana TAIR10
Primary Identifier:  ? AT2G05070 Defline:  (1 of 3) K08913 - light-harvesting complex II chlorophyll a/b binding protein 2 (LHCB2)
Genomic Order:  385 Name:  ? AT2G05070
Secondary Identifier:  ? PAC:19643182
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G05070 0.5kb upstream 0.5kb upstream 1659 true Chr2: 1799234-1800892 Arabidopsis thaliana
AT2G05070 0.5kb upstream 0.5kb upstream 500 false Chr2: 1800393-1800892 Arabidopsis thaliana
AT2G05070 0.5kb downstream 0.5kb downstream 1659 true Chr2: 1798734-1800392 Arabidopsis thaliana
AT2G05070 0.5kb downstream 0.5kb downstream 500 false Chr2: 1798734-1799233 Arabidopsis thaliana
AT2G05070 1.0kb upstream 1.0kb upstream 2159 true Chr2: 1799234-1801392 Arabidopsis thaliana
AT2G05070 1.0kb upstream 1.0kb upstream 1000 false Chr2: 1800393-1801392 Arabidopsis thaliana
AT2G05070 1.0kb downstream 1.0kb downstream 2159 true Chr2: 1798234-1800392 Arabidopsis thaliana
AT2G05070 1.0kb downstream 1.0kb downstream 1000 false Chr2: 1798234-1799233 Arabidopsis thaliana
AT2G05070 2.0kb upstream 2.0kb upstream 3159 true Chr2: 1799234-1802392 Arabidopsis thaliana
AT2G05070 2.0kb upstream 2.0kb upstream 2000 false Chr2: 1800393-1802392 Arabidopsis thaliana
AT2G05070 2.0kb downstream 2.0kb downstream 3159 true Chr2: 1797234-1800392 Arabidopsis thaliana
AT2G05070 2.0kb downstream 2.0kb downstream 2000 false Chr2: 1797234-1799233 Arabidopsis thaliana
AT2G05070 5.0kb upstream 5.0kb upstream 6159 true Chr2: 1799234-1805392 Arabidopsis thaliana
AT2G05070 5.0kb upstream 5.0kb upstream 5000 false Chr2: 1800393-1805392 Arabidopsis thaliana
AT2G05070 5.0kb downstream 5.0kb downstream 6159 true Chr2: 1794234-1800392 Arabidopsis thaliana
AT2G05070 5.0kb downstream 5.0kb downstream 5000 false Chr2: 1794234-1799233 Arabidopsis thaliana
AT2G05070 10.0kb upstream 10.0kb upstream 11159 true Chr2: 1799234-1810392 Arabidopsis thaliana
AT2G05070 10.0kb upstream 10.0kb upstream 10000 false Chr2: 1800393-1810392 Arabidopsis thaliana
AT2G05070 10.0kb downstream 10.0kb downstream 11159 true Chr2: 1789234-1800392 Arabidopsis thaliana
AT2G05070 10.0kb downstream 10.0kb downstream 10000 false Chr2: 1789234-1799233 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041019 5273 Angiosperm View MSA
122329613 5261 Brassicaceae Singleton cluster - no MSA
123837255 5264 Brassicales-Malvales View MSA
124322273 5266 SBM View MSA
124251420 5268 Malvidae View MSA
124062505 5270 Rosid View MSA
123749191 5271 Pentapetalae View MSA
122791500 5272 Eudicot View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 223.267     High  
cufflinks 2.314        
cufflinks 762.429     High  
cufflinks 3.699        
cufflinks 1302.087     High High
cufflinks 1.245       Low

0 Strain