Gene : TH1 A. thaliana TAIR10
Primary Identifier:  ? AT1G22940 Defline:  (1 of 1) 2.7.4.7 - Phosphomethylpyrimidine kinase / Hydroxymethylpyrimidine phosphokinase
Genomic Order:  2320 Name:  ? AT1G22940
Secondary Identifier:  ? PAC:19651214
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6890 Arabidopsis thaliana pathologic  
Athaliana PWY-6908 Arabidopsis thaliana pathologic  
Athaliana PWY-6910 Arabidopsis thaliana pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G22940 0.5kb upstream 0.5kb upstream 3230 true Chr1: 8121839-8125068 Arabidopsis thaliana
AT1G22940 0.5kb upstream 0.5kb upstream 500 false Chr1: 8121839-8122338 Arabidopsis thaliana
AT1G22940 0.5kb downstream 0.5kb downstream 3230 true Chr1: 8122339-8125568 Arabidopsis thaliana
AT1G22940 0.5kb downstream 0.5kb downstream 500 false Chr1: 8125069-8125568 Arabidopsis thaliana
AT1G22940 1.0kb upstream 1.0kb upstream 3730 true Chr1: 8121339-8125068 Arabidopsis thaliana
AT1G22940 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8121339-8122338 Arabidopsis thaliana
AT1G22940 1.0kb downstream 1.0kb downstream 3730 true Chr1: 8122339-8126068 Arabidopsis thaliana
AT1G22940 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8125069-8126068 Arabidopsis thaliana
AT1G22940 2.0kb upstream 2.0kb upstream 4730 true Chr1: 8120339-8125068 Arabidopsis thaliana
AT1G22940 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8120339-8122338 Arabidopsis thaliana
AT1G22940 2.0kb downstream 2.0kb downstream 4730 true Chr1: 8122339-8127068 Arabidopsis thaliana
AT1G22940 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8125069-8127068 Arabidopsis thaliana
AT1G22940 5.0kb upstream 5.0kb upstream 7730 true Chr1: 8117339-8125068 Arabidopsis thaliana
AT1G22940 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8117339-8122338 Arabidopsis thaliana
AT1G22940 5.0kb downstream 5.0kb downstream 7730 true Chr1: 8122339-8130068 Arabidopsis thaliana
AT1G22940 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8125069-8130068 Arabidopsis thaliana
AT1G22940 10.0kb upstream 10.0kb upstream 12730 true Chr1: 8112339-8125068 Arabidopsis thaliana
AT1G22940 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8112339-8122338 Arabidopsis thaliana
AT1G22940 10.0kb downstream 10.0kb downstream 12730 true Chr1: 8122339-8135068 Arabidopsis thaliana
AT1G22940 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8125069-8135068 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361033 5261 Brassicaceae View MSA
123829578 5264 Brassicales-Malvales View MSA
124340765 5266 SBM View MSA
124237684 5268 Malvidae View MSA
124063802 5270 Rosid View MSA
123739977 5271 Pentapetalae View MSA
122792526 5272 Eudicot View MSA
122045389 5273 Angiosperm View MSA
121344045 5274 Embryophyte View MSA
123424693 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.298        
cufflinks 5.934        
cufflinks 9.297        
cufflinks 6.186        
cufflinks 8.624        
cufflinks 5.286       Low

0 Strain