Gene : AT1G48570 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23111//PTHR23111:SF40 - ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  3884
Name:  ? AT1G48570 Secondary Identifier:  ? PAC:19656549
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G48570 0.5kb upstream 0.5kb upstream 2942 true Chr1: 17955278-17958219 Arabidopsis thaliana
AT1G48570 0.5kb upstream 0.5kb upstream 500 false Chr1: 17957720-17958219 Arabidopsis thaliana
AT1G48570 0.5kb downstream 0.5kb downstream 2942 true Chr1: 17954778-17957719 Arabidopsis thaliana
AT1G48570 0.5kb downstream 0.5kb downstream 500 false Chr1: 17954778-17955277 Arabidopsis thaliana
AT1G48570 1.0kb upstream 1.0kb upstream 3442 true Chr1: 17955278-17958719 Arabidopsis thaliana
AT1G48570 1.0kb upstream 1.0kb upstream 1000 false Chr1: 17957720-17958719 Arabidopsis thaliana
AT1G48570 1.0kb downstream 1.0kb downstream 3442 true Chr1: 17954278-17957719 Arabidopsis thaliana
AT1G48570 1.0kb downstream 1.0kb downstream 1000 false Chr1: 17954278-17955277 Arabidopsis thaliana
AT1G48570 2.0kb upstream 2.0kb upstream 4442 true Chr1: 17955278-17959719 Arabidopsis thaliana
AT1G48570 2.0kb upstream 2.0kb upstream 2000 false Chr1: 17957720-17959719 Arabidopsis thaliana
AT1G48570 2.0kb downstream 2.0kb downstream 4442 true Chr1: 17953278-17957719 Arabidopsis thaliana
AT1G48570 2.0kb downstream 2.0kb downstream 2000 false Chr1: 17953278-17955277 Arabidopsis thaliana
AT1G48570 5.0kb upstream 5.0kb upstream 7442 true Chr1: 17955278-17962719 Arabidopsis thaliana
AT1G48570 5.0kb upstream 5.0kb upstream 5000 false Chr1: 17957720-17962719 Arabidopsis thaliana
AT1G48570 5.0kb downstream 5.0kb downstream 7442 true Chr1: 17950278-17957719 Arabidopsis thaliana
AT1G48570 5.0kb downstream 5.0kb downstream 5000 false Chr1: 17950278-17955277 Arabidopsis thaliana
AT1G48570 10.0kb upstream 10.0kb upstream 12442 true Chr1: 17955278-17967719 Arabidopsis thaliana
AT1G48570 10.0kb upstream 10.0kb upstream 10000 false Chr1: 17957720-17967719 Arabidopsis thaliana
AT1G48570 10.0kb downstream 10.0kb downstream 12442 true Chr1: 17945278-17957719 Arabidopsis thaliana
AT1G48570 10.0kb downstream 10.0kb downstream 10000 false Chr1: 17945278-17955277 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372158 5261 Brassicaceae View MSA
123829064 5264 Brassicales-Malvales View MSA
124337976 5266 SBM View MSA
124238473 5268 Malvidae View MSA
124068006 5270 Rosid View MSA
123752037 5271 Pentapetalae View MSA
122793465 5272 Eudicot View MSA
122045549 5273 Angiosperm View MSA
121349230 5274 Embryophyte View MSA
123427278 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.374       High
cufflinks 3.861        
cufflinks 11.94        
cufflinks 4.36        
cufflinks 8.18        
cufflinks 4.145        

0 Strain