Gene : RHL1 A. thaliana TAIR10
Primary Identifier:  ? AT1G48380 Defline:  (1 of 1) PTHR35698//PTHR35698:SF1 - FAMILY NOT NAMED // DNA-BINDING PROTEIN RHL1
Genomic Order:  3864 Name:  ? AT1G48380
Secondary Identifier:  ? PAC:19654096
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G48380 0.5kb upstream 0.5kb upstream 2358 true Chr1: 17877413-17879770 Arabidopsis thaliana
AT1G48380 0.5kb upstream 0.5kb upstream 500 false Chr1: 17879271-17879770 Arabidopsis thaliana
AT1G48380 0.5kb downstream 0.5kb downstream 2358 true Chr1: 17876913-17879270 Arabidopsis thaliana
AT1G48380 0.5kb downstream 0.5kb downstream 500 false Chr1: 17876913-17877412 Arabidopsis thaliana
AT1G48380 1.0kb upstream 1.0kb upstream 2858 true Chr1: 17877413-17880270 Arabidopsis thaliana
AT1G48380 1.0kb upstream 1.0kb upstream 1000 false Chr1: 17879271-17880270 Arabidopsis thaliana
AT1G48380 1.0kb downstream 1.0kb downstream 2858 true Chr1: 17876413-17879270 Arabidopsis thaliana
AT1G48380 1.0kb downstream 1.0kb downstream 1000 false Chr1: 17876413-17877412 Arabidopsis thaliana
AT1G48380 2.0kb upstream 2.0kb upstream 3858 true Chr1: 17877413-17881270 Arabidopsis thaliana
AT1G48380 2.0kb upstream 2.0kb upstream 2000 false Chr1: 17879271-17881270 Arabidopsis thaliana
AT1G48380 2.0kb downstream 2.0kb downstream 3858 true Chr1: 17875413-17879270 Arabidopsis thaliana
AT1G48380 2.0kb downstream 2.0kb downstream 2000 false Chr1: 17875413-17877412 Arabidopsis thaliana
AT1G48380 5.0kb upstream 5.0kb upstream 6858 true Chr1: 17877413-17884270 Arabidopsis thaliana
AT1G48380 5.0kb upstream 5.0kb upstream 5000 false Chr1: 17879271-17884270 Arabidopsis thaliana
AT1G48380 5.0kb downstream 5.0kb downstream 6858 true Chr1: 17872413-17879270 Arabidopsis thaliana
AT1G48380 5.0kb downstream 5.0kb downstream 5000 false Chr1: 17872413-17877412 Arabidopsis thaliana
AT1G48380 10.0kb upstream 10.0kb upstream 11858 true Chr1: 17877413-17889270 Arabidopsis thaliana
AT1G48380 10.0kb upstream 10.0kb upstream 10000 false Chr1: 17879271-17889270 Arabidopsis thaliana
AT1G48380 10.0kb downstream 10.0kb downstream 11858 true Chr1: 17867413-17879270 Arabidopsis thaliana
AT1G48380 10.0kb downstream 10.0kb downstream 10000 false Chr1: 17867413-17877412 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369306 5261 Brassicaceae View MSA
123835011 5264 Brassicales-Malvales View MSA
124342036 5266 SBM View MSA
124241164 5268 Malvidae View MSA
124061224 5270 Rosid View MSA
123745931 5271 Pentapetalae View MSA
122792650 5272 Eudicot View MSA
122048077 5273 Angiosperm View MSA
121344975 5274 Embryophyte View MSA
123426028 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.069        
cufflinks 5.401        
cufflinks 2.405       Low
cufflinks 5.643        
cufflinks 2.6        
cufflinks 5.491        

0 Strain