Gene : RBP47A A. thaliana TAIR10
Primary Identifier:  ? AT1G49600 Defline:  (1 of 4) PTHR24012:SF403 - POLYADENYLATE-BINDING PROTEIN RBP47A
Genomic Order:  3986 Name:  ? AT1G49600
Secondary Identifier:  ? PAC:19656921
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G49600 0.5kb upstream 0.5kb upstream 3765 true Chr1: 18356886-18360650 Arabidopsis thaliana
AT1G49600 0.5kb upstream 0.5kb upstream 500 false Chr1: 18360151-18360650 Arabidopsis thaliana
AT1G49600 0.5kb downstream 0.5kb downstream 3765 true Chr1: 18356386-18360150 Arabidopsis thaliana
AT1G49600 0.5kb downstream 0.5kb downstream 500 false Chr1: 18356386-18356885 Arabidopsis thaliana
AT1G49600 1.0kb upstream 1.0kb upstream 4265 true Chr1: 18356886-18361150 Arabidopsis thaliana
AT1G49600 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18360151-18361150 Arabidopsis thaliana
AT1G49600 1.0kb downstream 1.0kb downstream 4265 true Chr1: 18355886-18360150 Arabidopsis thaliana
AT1G49600 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18355886-18356885 Arabidopsis thaliana
AT1G49600 2.0kb upstream 2.0kb upstream 5265 true Chr1: 18356886-18362150 Arabidopsis thaliana
AT1G49600 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18360151-18362150 Arabidopsis thaliana
AT1G49600 2.0kb downstream 2.0kb downstream 5265 true Chr1: 18354886-18360150 Arabidopsis thaliana
AT1G49600 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18354886-18356885 Arabidopsis thaliana
AT1G49600 5.0kb upstream 5.0kb upstream 8265 true Chr1: 18356886-18365150 Arabidopsis thaliana
AT1G49600 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18360151-18365150 Arabidopsis thaliana
AT1G49600 5.0kb downstream 5.0kb downstream 8265 true Chr1: 18351886-18360150 Arabidopsis thaliana
AT1G49600 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18351886-18356885 Arabidopsis thaliana
AT1G49600 10.0kb upstream 10.0kb upstream 13265 true Chr1: 18356886-18370150 Arabidopsis thaliana
AT1G49600 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18360151-18370150 Arabidopsis thaliana
AT1G49600 10.0kb downstream 10.0kb downstream 13265 true Chr1: 18346886-18360150 Arabidopsis thaliana
AT1G49600 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18346886-18356885 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373947 5261 Brassicaceae View MSA
123835905 5264 Brassicales-Malvales View MSA
124337966 5266 SBM View MSA
124243321 5268 Malvidae View MSA
124065696 5270 Rosid View MSA
123744612 5271 Pentapetalae View MSA
122796677 5272 Eudicot View MSA
122051452 5273 Angiosperm View MSA
121351371 5274 Embryophyte View MSA
123424048 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.737     High  
cufflinks 45.706     High  
cufflinks 27.506     High  
cufflinks 42.124     High  
cufflinks 17.864       Low
cufflinks 49.88     High  

0 Strain