Gene : AT1G78010 A. thaliana TAIR10
Defline:  (1 of 1) K03650 - tRNA modification GTPase [EC:3.6.-.-] (mnmE, trmE, MSS1) Genomic Order:  6776
Name:  ? AT1G78010 Secondary Identifier:  ? PAC:19657535
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78010 0.5kb upstream 0.5kb upstream 3452 true Chr1: 29333000-29336451 Arabidopsis thaliana
AT1G78010 0.5kb upstream 0.5kb upstream 500 false Chr1: 29333000-29333499 Arabidopsis thaliana
AT1G78010 0.5kb downstream 0.5kb downstream 3452 true Chr1: 29333500-29336951 Arabidopsis thaliana
AT1G78010 0.5kb downstream 0.5kb downstream 500 false Chr1: 29336452-29336951 Arabidopsis thaliana
AT1G78010 1.0kb upstream 1.0kb upstream 3952 true Chr1: 29332500-29336451 Arabidopsis thaliana
AT1G78010 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29332500-29333499 Arabidopsis thaliana
AT1G78010 1.0kb downstream 1.0kb downstream 3952 true Chr1: 29333500-29337451 Arabidopsis thaliana
AT1G78010 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29336452-29337451 Arabidopsis thaliana
AT1G78010 2.0kb upstream 2.0kb upstream 4952 true Chr1: 29331500-29336451 Arabidopsis thaliana
AT1G78010 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29331500-29333499 Arabidopsis thaliana
AT1G78010 2.0kb downstream 2.0kb downstream 4952 true Chr1: 29333500-29338451 Arabidopsis thaliana
AT1G78010 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29336452-29338451 Arabidopsis thaliana
AT1G78010 5.0kb upstream 5.0kb upstream 7952 true Chr1: 29328500-29336451 Arabidopsis thaliana
AT1G78010 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29328500-29333499 Arabidopsis thaliana
AT1G78010 5.0kb downstream 5.0kb downstream 7952 true Chr1: 29333500-29341451 Arabidopsis thaliana
AT1G78010 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29336452-29341451 Arabidopsis thaliana
AT1G78010 10.0kb upstream 10.0kb upstream 12952 true Chr1: 29323500-29336451 Arabidopsis thaliana
AT1G78010 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29323500-29333499 Arabidopsis thaliana
AT1G78010 10.0kb downstream 10.0kb downstream 12952 true Chr1: 29333500-29346451 Arabidopsis thaliana
AT1G78010 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29336452-29346451 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366049 5261 Brassicaceae View MSA
123834682 5264 Brassicales-Malvales View MSA
124344028 5266 SBM View MSA
124242361 5268 Malvidae View MSA
124062172 5270 Rosid View MSA
123739565 5271 Pentapetalae View MSA
122791860 5272 Eudicot View MSA
122042865 5273 Angiosperm View MSA
121344741 5274 Embryophyte View MSA
123428429 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.584       High
cufflinks 6.912        
cufflinks 10.51        
cufflinks 5.281        
cufflinks 8.341        
cufflinks 4.748       Low

0 Strain