Gene : AT1G79990 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12952 - SYS1 Genomic Order:  6976
Name:  ? AT1G79990 Secondary Identifier:  ? PAC:19653587
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G79990 0.5kb upstream 0.5kb upstream 8625 true Chr1: 30083614-30092238 Arabidopsis thaliana
AT1G79990 0.5kb upstream 0.5kb upstream 500 false Chr1: 30083614-30084113 Arabidopsis thaliana
AT1G79990 0.5kb downstream 0.5kb downstream 8625 true Chr1: 30084114-30092738 Arabidopsis thaliana
AT1G79990 0.5kb downstream 0.5kb downstream 500 false Chr1: 30092239-30092738 Arabidopsis thaliana
AT1G79990 1.0kb upstream 1.0kb upstream 9125 true Chr1: 30083114-30092238 Arabidopsis thaliana
AT1G79990 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30083114-30084113 Arabidopsis thaliana
AT1G79990 1.0kb downstream 1.0kb downstream 9125 true Chr1: 30084114-30093238 Arabidopsis thaliana
AT1G79990 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30092239-30093238 Arabidopsis thaliana
AT1G79990 2.0kb upstream 2.0kb upstream 10125 true Chr1: 30082114-30092238 Arabidopsis thaliana
AT1G79990 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30082114-30084113 Arabidopsis thaliana
AT1G79990 2.0kb downstream 2.0kb downstream 10125 true Chr1: 30084114-30094238 Arabidopsis thaliana
AT1G79990 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30092239-30094238 Arabidopsis thaliana
AT1G79990 5.0kb upstream 5.0kb upstream 13125 true Chr1: 30079114-30092238 Arabidopsis thaliana
AT1G79990 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30079114-30084113 Arabidopsis thaliana
AT1G79990 5.0kb downstream 5.0kb downstream 13125 true Chr1: 30084114-30097238 Arabidopsis thaliana
AT1G79990 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30092239-30097238 Arabidopsis thaliana
AT1G79990 10.0kb upstream 10.0kb upstream 18125 true Chr1: 30074114-30092238 Arabidopsis thaliana
AT1G79990 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30074114-30084113 Arabidopsis thaliana
AT1G79990 10.0kb downstream 10.0kb downstream 18125 true Chr1: 30084114-30102238 Arabidopsis thaliana
AT1G79990 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30092239-30102238 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122328682 5261 Brassicaceae Singleton cluster - no MSA
123770022 5264 Brassicales-Malvales Singleton cluster - no MSA
124268572 5266 SBM Singleton cluster - no MSA
124124763 5268 Malvidae Singleton cluster - no MSA
123853769 5270 Rosid Singleton cluster - no MSA
123745194 5271 Pentapetalae View MSA
122792729 5272 Eudicot View MSA
122046089 5273 Angiosperm View MSA
121350905 5274 Embryophyte View MSA
123424044 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.614        
cufflinks 8.659        
cufflinks 4.876       Low
cufflinks 9.496        
cufflinks 4.861       Low
cufflinks 9.889       High

0 Strain