Gene : AT1G21550 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10891//PTHR10891:SF530 - EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  2172
Name:  ? AT1G21550 Secondary Identifier:  ? PAC:19653316
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G21550 0.5kb upstream 0.5kb upstream 1276 true Chr1: 7553101-7554376 Arabidopsis thaliana
AT1G21550 0.5kb upstream 0.5kb upstream 500 false Chr1: 7553877-7554376 Arabidopsis thaliana
AT1G21550 0.5kb downstream 0.5kb downstream 1276 true Chr1: 7552601-7553876 Arabidopsis thaliana
AT1G21550 0.5kb downstream 0.5kb downstream 500 false Chr1: 7552601-7553100 Arabidopsis thaliana
AT1G21550 1.0kb upstream 1.0kb upstream 1776 true Chr1: 7553101-7554876 Arabidopsis thaliana
AT1G21550 1.0kb upstream 1.0kb upstream 1000 false Chr1: 7553877-7554876 Arabidopsis thaliana
AT1G21550 1.0kb downstream 1.0kb downstream 1776 true Chr1: 7552101-7553876 Arabidopsis thaliana
AT1G21550 1.0kb downstream 1.0kb downstream 1000 false Chr1: 7552101-7553100 Arabidopsis thaliana
AT1G21550 2.0kb upstream 2.0kb upstream 2776 true Chr1: 7553101-7555876 Arabidopsis thaliana
AT1G21550 2.0kb upstream 2.0kb upstream 2000 false Chr1: 7553877-7555876 Arabidopsis thaliana
AT1G21550 2.0kb downstream 2.0kb downstream 2776 true Chr1: 7551101-7553876 Arabidopsis thaliana
AT1G21550 2.0kb downstream 2.0kb downstream 2000 false Chr1: 7551101-7553100 Arabidopsis thaliana
AT1G21550 5.0kb upstream 5.0kb upstream 5776 true Chr1: 7553101-7558876 Arabidopsis thaliana
AT1G21550 5.0kb upstream 5.0kb upstream 5000 false Chr1: 7553877-7558876 Arabidopsis thaliana
AT1G21550 5.0kb downstream 5.0kb downstream 5776 true Chr1: 7548101-7553876 Arabidopsis thaliana
AT1G21550 5.0kb downstream 5.0kb downstream 5000 false Chr1: 7548101-7553100 Arabidopsis thaliana
AT1G21550 10.0kb upstream 10.0kb upstream 10776 true Chr1: 7553101-7563876 Arabidopsis thaliana
AT1G21550 10.0kb upstream 10.0kb upstream 10000 false Chr1: 7553877-7563876 Arabidopsis thaliana
AT1G21550 10.0kb downstream 10.0kb downstream 10776 true Chr1: 7543101-7553876 Arabidopsis thaliana
AT1G21550 10.0kb downstream 10.0kb downstream 10000 false Chr1: 7543101-7553100 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368817 5261 Brassicaceae View MSA
123837444 5264 Brassicales-Malvales View MSA
124347551 5266 SBM View MSA
124240340 5268 Malvidae View MSA
124062602 5270 Rosid View MSA
123738690 5271 Pentapetalae View MSA
122797545 5272 Eudicot View MSA
122048615 5273 Angiosperm View MSA
121311039 5274 Embryophyte View MSA
123348393 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.717        
cufflinks 0.291     Low Low
cufflinks 11.862        
cufflinks 0.559        
cufflinks 27.013     High High
cufflinks 0.585        

0 Strain