Gene : TRB1 A. thaliana TAIR10
Primary Identifier:  ? AT1G49950 Defline:  (1 of 3) PTHR21717//PTHR21717:SF27 - TELOMERIC REPEAT BINDING PROTEIN // TELOMERE REPEAT-BINDING FACTOR 2-RELATED
Genomic Order:  4022 Name:  ? AT1G49950
Secondary Identifier:  ? PAC:19657914
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G49950 0.5kb upstream 0.5kb upstream 3637 true Chr1: 18494103-18497739 Arabidopsis thaliana
AT1G49950 0.5kb upstream 0.5kb upstream 500 false Chr1: 18497240-18497739 Arabidopsis thaliana
AT1G49950 0.5kb downstream 0.5kb downstream 3637 true Chr1: 18493603-18497239 Arabidopsis thaliana
AT1G49950 0.5kb downstream 0.5kb downstream 500 false Chr1: 18493603-18494102 Arabidopsis thaliana
AT1G49950 1.0kb upstream 1.0kb upstream 4137 true Chr1: 18494103-18498239 Arabidopsis thaliana
AT1G49950 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18497240-18498239 Arabidopsis thaliana
AT1G49950 1.0kb downstream 1.0kb downstream 4137 true Chr1: 18493103-18497239 Arabidopsis thaliana
AT1G49950 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18493103-18494102 Arabidopsis thaliana
AT1G49950 2.0kb upstream 2.0kb upstream 5137 true Chr1: 18494103-18499239 Arabidopsis thaliana
AT1G49950 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18497240-18499239 Arabidopsis thaliana
AT1G49950 2.0kb downstream 2.0kb downstream 5137 true Chr1: 18492103-18497239 Arabidopsis thaliana
AT1G49950 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18492103-18494102 Arabidopsis thaliana
AT1G49950 5.0kb upstream 5.0kb upstream 8137 true Chr1: 18494103-18502239 Arabidopsis thaliana
AT1G49950 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18497240-18502239 Arabidopsis thaliana
AT1G49950 5.0kb downstream 5.0kb downstream 8137 true Chr1: 18489103-18497239 Arabidopsis thaliana
AT1G49950 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18489103-18494102 Arabidopsis thaliana
AT1G49950 10.0kb upstream 10.0kb upstream 13137 true Chr1: 18494103-18507239 Arabidopsis thaliana
AT1G49950 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18497240-18507239 Arabidopsis thaliana
AT1G49950 10.0kb downstream 10.0kb downstream 13137 true Chr1: 18484103-18497239 Arabidopsis thaliana
AT1G49950 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18484103-18494102 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368530 5261 Brassicaceae View MSA
123828209 5264 Brassicales-Malvales View MSA
124341373 5266 SBM View MSA
124247501 5268 Malvidae View MSA
124073708 5270 Rosid View MSA
123739242 5271 Pentapetalae View MSA
122787405 5272 Eudicot View MSA
122045775 5273 Angiosperm View MSA
121350383 5274 Embryophyte View MSA
123425799 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.774        
cufflinks 6.855       High
cufflinks 3.162        
cufflinks 5.429        
cufflinks 3.013       Low
cufflinks 6.473        

0 Strain