Gene : SHB A. thaliana TAIR10
Primary Identifier:  ? AT1G78540 Defline:  (1 of 2) PTHR11801 - SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION
Genomic Order:  6828 Name:  ? AT1G78540
Secondary Identifier:  ? PAC:19656264
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78540 0.5kb upstream 0.5kb upstream 4267 true Chr1: 29541011-29545277 Arabidopsis thaliana
AT1G78540 0.5kb upstream 0.5kb upstream 500 false Chr1: 29544778-29545277 Arabidopsis thaliana
AT1G78540 0.5kb downstream 0.5kb downstream 4267 true Chr1: 29540511-29544777 Arabidopsis thaliana
AT1G78540 0.5kb downstream 0.5kb downstream 500 false Chr1: 29540511-29541010 Arabidopsis thaliana
AT1G78540 1.0kb upstream 1.0kb upstream 4767 true Chr1: 29541011-29545777 Arabidopsis thaliana
AT1G78540 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29544778-29545777 Arabidopsis thaliana
AT1G78540 1.0kb downstream 1.0kb downstream 4767 true Chr1: 29540011-29544777 Arabidopsis thaliana
AT1G78540 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29540011-29541010 Arabidopsis thaliana
AT1G78540 2.0kb upstream 2.0kb upstream 5767 true Chr1: 29541011-29546777 Arabidopsis thaliana
AT1G78540 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29544778-29546777 Arabidopsis thaliana
AT1G78540 2.0kb downstream 2.0kb downstream 5767 true Chr1: 29539011-29544777 Arabidopsis thaliana
AT1G78540 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29539011-29541010 Arabidopsis thaliana
AT1G78540 5.0kb upstream 5.0kb upstream 8767 true Chr1: 29541011-29549777 Arabidopsis thaliana
AT1G78540 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29544778-29549777 Arabidopsis thaliana
AT1G78540 5.0kb downstream 5.0kb downstream 8767 true Chr1: 29536011-29544777 Arabidopsis thaliana
AT1G78540 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29536011-29541010 Arabidopsis thaliana
AT1G78540 10.0kb upstream 10.0kb upstream 13767 true Chr1: 29541011-29554777 Arabidopsis thaliana
AT1G78540 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29544778-29554777 Arabidopsis thaliana
AT1G78540 10.0kb downstream 10.0kb downstream 13767 true Chr1: 29531011-29544777 Arabidopsis thaliana
AT1G78540 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29531011-29541010 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376558 5261 Brassicaceae View MSA
123837315 5264 Brassicales-Malvales View MSA
124342395 5266 SBM View MSA
124238773 5268 Malvidae View MSA
124067056 5270 Rosid View MSA
123736368 5271 Pentapetalae View MSA
122785651 5272 Eudicot View MSA
122044134 5273 Angiosperm View MSA
121347247 5274 Embryophyte View MSA
123380519 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.358        
cufflinks 1.371        
cufflinks 1.209       Low
cufflinks 1.347        
cufflinks 1.198       Low
cufflinks 1.392        

0 Strain