Gene : AT1G53190 A. thaliana TAIR10
Defline:  (1 of 2) PTHR22937//PTHR22937:SF48 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  4356
Name:  ? AT1G53190 Secondary Identifier:  ? PAC:19650177
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G53190 0.5kb upstream 0.5kb upstream 3618 true Chr1: 19836610-19840227 Arabidopsis thaliana
AT1G53190 0.5kb upstream 0.5kb upstream 500 false Chr1: 19836610-19837109 Arabidopsis thaliana
AT1G53190 0.5kb downstream 0.5kb downstream 3618 true Chr1: 19837110-19840727 Arabidopsis thaliana
AT1G53190 0.5kb downstream 0.5kb downstream 500 false Chr1: 19840228-19840727 Arabidopsis thaliana
AT1G53190 1.0kb upstream 1.0kb upstream 4118 true Chr1: 19836110-19840227 Arabidopsis thaliana
AT1G53190 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19836110-19837109 Arabidopsis thaliana
AT1G53190 1.0kb downstream 1.0kb downstream 4118 true Chr1: 19837110-19841227 Arabidopsis thaliana
AT1G53190 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19840228-19841227 Arabidopsis thaliana
AT1G53190 2.0kb upstream 2.0kb upstream 5118 true Chr1: 19835110-19840227 Arabidopsis thaliana
AT1G53190 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19835110-19837109 Arabidopsis thaliana
AT1G53190 2.0kb downstream 2.0kb downstream 5118 true Chr1: 19837110-19842227 Arabidopsis thaliana
AT1G53190 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19840228-19842227 Arabidopsis thaliana
AT1G53190 5.0kb upstream 5.0kb upstream 8118 true Chr1: 19832110-19840227 Arabidopsis thaliana
AT1G53190 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19832110-19837109 Arabidopsis thaliana
AT1G53190 5.0kb downstream 5.0kb downstream 8118 true Chr1: 19837110-19845227 Arabidopsis thaliana
AT1G53190 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19840228-19845227 Arabidopsis thaliana
AT1G53190 10.0kb upstream 10.0kb upstream 13118 true Chr1: 19827110-19840227 Arabidopsis thaliana
AT1G53190 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19827110-19837109 Arabidopsis thaliana
AT1G53190 10.0kb downstream 10.0kb downstream 13118 true Chr1: 19837110-19850227 Arabidopsis thaliana
AT1G53190 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19840228-19850227 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367057 5261 Brassicaceae View MSA
123832642 5264 Brassicales-Malvales View MSA
124346749 5266 SBM View MSA
124251992 5268 Malvidae View MSA
124064145 5270 Rosid View MSA
123736364 5271 Pentapetalae View MSA
122797895 5272 Eudicot View MSA
122050117 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121311750 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.658        
cufflinks 3.753        
cufflinks 3.369        
cufflinks 4.679       High
cufflinks 3.385        
cufflinks 3.469        

0 Strain