Gene : MSL4 A. thaliana TAIR10
Primary Identifier:  ? AT1G53470 Defline:  (1 of 2) PTHR31618:SF7 - MECHANOSENSITIVE ION CHANNEL PROTEIN 4-RELATED
Genomic Order:  4388 Name:  ? AT1G53470
Secondary Identifier:  ? PAC:19657354
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G53470 0.5kb upstream 0.5kb upstream 3492 true Chr1: 19958087-19961578 Arabidopsis thaliana
AT1G53470 0.5kb upstream 0.5kb upstream 500 false Chr1: 19958087-19958586 Arabidopsis thaliana
AT1G53470 0.5kb downstream 0.5kb downstream 3492 true Chr1: 19958587-19962078 Arabidopsis thaliana
AT1G53470 0.5kb downstream 0.5kb downstream 500 false Chr1: 19961579-19962078 Arabidopsis thaliana
AT1G53470 1.0kb upstream 1.0kb upstream 3992 true Chr1: 19957587-19961578 Arabidopsis thaliana
AT1G53470 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19957587-19958586 Arabidopsis thaliana
AT1G53470 1.0kb downstream 1.0kb downstream 3992 true Chr1: 19958587-19962578 Arabidopsis thaliana
AT1G53470 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19961579-19962578 Arabidopsis thaliana
AT1G53470 2.0kb upstream 2.0kb upstream 4992 true Chr1: 19956587-19961578 Arabidopsis thaliana
AT1G53470 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19956587-19958586 Arabidopsis thaliana
AT1G53470 2.0kb downstream 2.0kb downstream 4992 true Chr1: 19958587-19963578 Arabidopsis thaliana
AT1G53470 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19961579-19963578 Arabidopsis thaliana
AT1G53470 5.0kb upstream 5.0kb upstream 7992 true Chr1: 19953587-19961578 Arabidopsis thaliana
AT1G53470 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19953587-19958586 Arabidopsis thaliana
AT1G53470 5.0kb downstream 5.0kb downstream 7992 true Chr1: 19958587-19966578 Arabidopsis thaliana
AT1G53470 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19961579-19966578 Arabidopsis thaliana
AT1G53470 10.0kb upstream 10.0kb upstream 12992 true Chr1: 19948587-19961578 Arabidopsis thaliana
AT1G53470 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19948587-19958586 Arabidopsis thaliana
AT1G53470 10.0kb downstream 10.0kb downstream 12992 true Chr1: 19958587-19971578 Arabidopsis thaliana
AT1G53470 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19961579-19971578 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361215 5261 Brassicaceae View MSA
123798119 5264 Brassicales-Malvales View MSA
124295795 5266 SBM View MSA
124253835 5268 Malvidae View MSA
124068168 5270 Rosid View MSA
123745809 5271 Pentapetalae View MSA
122795005 5272 Eudicot View MSA
122045304 5273 Angiosperm View MSA
121348130 5274 Embryophyte View MSA
123428857 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.483        
cufflinks 1.786        
cufflinks 0.395        
cufflinks 7.47       High
cufflinks 0.316       Low
cufflinks 5.565       High

0 Strain