Gene : BETA-VPE A. thaliana TAIR10
Primary Identifier:  ? AT1G62710 Defline:  (1 of 1) PTHR12000:SF3 - LEGUMAIN
Genomic Order:  5178 Name:  ? AT1G62710
Secondary Identifier:  ? PAC:19651616
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G62710 0.5kb upstream 0.5kb upstream 3543 true Chr1: 23223874-23227416 Arabidopsis thaliana
AT1G62710 0.5kb upstream 0.5kb upstream 500 false Chr1: 23226917-23227416 Arabidopsis thaliana
AT1G62710 0.5kb downstream 0.5kb downstream 3543 true Chr1: 23223374-23226916 Arabidopsis thaliana
AT1G62710 0.5kb downstream 0.5kb downstream 500 false Chr1: 23223374-23223873 Arabidopsis thaliana
AT1G62710 1.0kb upstream 1.0kb upstream 4043 true Chr1: 23223874-23227916 Arabidopsis thaliana
AT1G62710 1.0kb upstream 1.0kb upstream 1000 false Chr1: 23226917-23227916 Arabidopsis thaliana
AT1G62710 1.0kb downstream 1.0kb downstream 4043 true Chr1: 23222874-23226916 Arabidopsis thaliana
AT1G62710 1.0kb downstream 1.0kb downstream 1000 false Chr1: 23222874-23223873 Arabidopsis thaliana
AT1G62710 2.0kb upstream 2.0kb upstream 5043 true Chr1: 23223874-23228916 Arabidopsis thaliana
AT1G62710 2.0kb upstream 2.0kb upstream 2000 false Chr1: 23226917-23228916 Arabidopsis thaliana
AT1G62710 2.0kb downstream 2.0kb downstream 5043 true Chr1: 23221874-23226916 Arabidopsis thaliana
AT1G62710 2.0kb downstream 2.0kb downstream 2000 false Chr1: 23221874-23223873 Arabidopsis thaliana
AT1G62710 5.0kb upstream 5.0kb upstream 8043 true Chr1: 23223874-23231916 Arabidopsis thaliana
AT1G62710 5.0kb upstream 5.0kb upstream 5000 false Chr1: 23226917-23231916 Arabidopsis thaliana
AT1G62710 5.0kb downstream 5.0kb downstream 8043 true Chr1: 23218874-23226916 Arabidopsis thaliana
AT1G62710 5.0kb downstream 5.0kb downstream 5000 false Chr1: 23218874-23223873 Arabidopsis thaliana
AT1G62710 10.0kb upstream 10.0kb upstream 13043 true Chr1: 23223874-23236916 Arabidopsis thaliana
AT1G62710 10.0kb upstream 10.0kb upstream 10000 false Chr1: 23226917-23236916 Arabidopsis thaliana
AT1G62710 10.0kb downstream 10.0kb downstream 13043 true Chr1: 23213874-23226916 Arabidopsis thaliana
AT1G62710 10.0kb downstream 10.0kb downstream 10000 false Chr1: 23213874-23223873 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370053 5261 Brassicaceae View MSA
123836069 5264 Brassicales-Malvales View MSA
124338934 5266 SBM View MSA
124241831 5268 Malvidae View MSA
124050213 5270 Rosid View MSA
123750585 5271 Pentapetalae View MSA
122797224 5272 Eudicot View MSA
122048479 5273 Angiosperm View MSA
121350664 5274 Embryophyte View MSA
123428632 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.209       Low
cufflinks 27.411        
cufflinks 5.254        
cufflinks 32.915     High  
cufflinks 11.232        
cufflinks 24.207        

0 Strain