Gene : SIGA A. thaliana TAIR10
Primary Identifier:  ? AT1G64860 Defline:  (1 of 1) K03086 - RNA polymerase primary sigma factor (SIG1, rpoD)
Genomic Order:  5410 Name:  ? AT1G64860
Secondary Identifier:  ? PAC:19657314
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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G64860 0.5kb upstream 0.5kb upstream 3540 true Chr1: 24097413-24100952 Arabidopsis thaliana
AT1G64860 0.5kb upstream 0.5kb upstream 500 false Chr1: 24097413-24097912 Arabidopsis thaliana
AT1G64860 0.5kb downstream 0.5kb downstream 3540 true Chr1: 24097913-24101452 Arabidopsis thaliana
AT1G64860 0.5kb downstream 0.5kb downstream 500 false Chr1: 24100953-24101452 Arabidopsis thaliana
AT1G64860 1.0kb upstream 1.0kb upstream 4040 true Chr1: 24096913-24100952 Arabidopsis thaliana
AT1G64860 1.0kb upstream 1.0kb upstream 1000 false Chr1: 24096913-24097912 Arabidopsis thaliana
AT1G64860 1.0kb downstream 1.0kb downstream 4040 true Chr1: 24097913-24101952 Arabidopsis thaliana
AT1G64860 1.0kb downstream 1.0kb downstream 1000 false Chr1: 24100953-24101952 Arabidopsis thaliana
AT1G64860 2.0kb upstream 2.0kb upstream 5040 true Chr1: 24095913-24100952 Arabidopsis thaliana
AT1G64860 2.0kb upstream 2.0kb upstream 2000 false Chr1: 24095913-24097912 Arabidopsis thaliana
AT1G64860 2.0kb downstream 2.0kb downstream 5040 true Chr1: 24097913-24102952 Arabidopsis thaliana
AT1G64860 2.0kb downstream 2.0kb downstream 2000 false Chr1: 24100953-24102952 Arabidopsis thaliana
AT1G64860 5.0kb upstream 5.0kb upstream 8040 true Chr1: 24092913-24100952 Arabidopsis thaliana
AT1G64860 5.0kb upstream 5.0kb upstream 5000 false Chr1: 24092913-24097912 Arabidopsis thaliana
AT1G64860 5.0kb downstream 5.0kb downstream 8040 true Chr1: 24097913-24105952 Arabidopsis thaliana
AT1G64860 5.0kb downstream 5.0kb downstream 5000 false Chr1: 24100953-24105952 Arabidopsis thaliana
AT1G64860 10.0kb upstream 10.0kb upstream 13040 true Chr1: 24087913-24100952 Arabidopsis thaliana
AT1G64860 10.0kb upstream 10.0kb upstream 10000 false Chr1: 24087913-24097912 Arabidopsis thaliana
AT1G64860 10.0kb downstream 10.0kb downstream 13040 true Chr1: 24097913-24110952 Arabidopsis thaliana
AT1G64860 10.0kb downstream 10.0kb downstream 10000 false Chr1: 24100953-24110952 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364067 5261 Brassicaceae View MSA
123834541 5264 Brassicales-Malvales View MSA
124340629 5266 SBM View MSA
124240953 5268 Malvidae View MSA
124062387 5270 Rosid View MSA
123751324 5271 Pentapetalae View MSA
122790966 5272 Eudicot View MSA
122043866 5273 Angiosperm View MSA
121344219 5274 Embryophyte View MSA
123380005 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.216        
cufflinks 2.035        
cufflinks 19.301        
cufflinks 2.434        
cufflinks 19.735        
cufflinks 2.314        

0 Strain