Gene : CSN5A A. thaliana TAIR10
Primary Identifier:  ? AT1G22920 Defline:  (1 of 2) K09613 - COP9 signalosome complex subunit 5 [EC:3.4.-.-] (COPS5, CSN5)
Genomic Order:  2318 Name:  ? AT1G22920
Secondary Identifier:  ? PAC:19657270
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G22920 0.5kb upstream 0.5kb upstream 2838 true Chr1: 8109714-8112551 Arabidopsis thaliana
AT1G22920 0.5kb upstream 0.5kb upstream 500 false Chr1: 8112052-8112551 Arabidopsis thaliana
AT1G22920 0.5kb downstream 0.5kb downstream 2838 true Chr1: 8109214-8112051 Arabidopsis thaliana
AT1G22920 0.5kb downstream 0.5kb downstream 500 false Chr1: 8109214-8109713 Arabidopsis thaliana
AT1G22920 1.0kb upstream 1.0kb upstream 3338 true Chr1: 8109714-8113051 Arabidopsis thaliana
AT1G22920 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8112052-8113051 Arabidopsis thaliana
AT1G22920 1.0kb downstream 1.0kb downstream 3338 true Chr1: 8108714-8112051 Arabidopsis thaliana
AT1G22920 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8108714-8109713 Arabidopsis thaliana
AT1G22920 2.0kb upstream 2.0kb upstream 4338 true Chr1: 8109714-8114051 Arabidopsis thaliana
AT1G22920 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8112052-8114051 Arabidopsis thaliana
AT1G22920 2.0kb downstream 2.0kb downstream 4338 true Chr1: 8107714-8112051 Arabidopsis thaliana
AT1G22920 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8107714-8109713 Arabidopsis thaliana
AT1G22920 5.0kb upstream 5.0kb upstream 7338 true Chr1: 8109714-8117051 Arabidopsis thaliana
AT1G22920 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8112052-8117051 Arabidopsis thaliana
AT1G22920 5.0kb downstream 5.0kb downstream 7338 true Chr1: 8104714-8112051 Arabidopsis thaliana
AT1G22920 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8104714-8109713 Arabidopsis thaliana
AT1G22920 10.0kb upstream 10.0kb upstream 12338 true Chr1: 8109714-8122051 Arabidopsis thaliana
AT1G22920 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8112052-8122051 Arabidopsis thaliana
AT1G22920 10.0kb downstream 10.0kb downstream 12338 true Chr1: 8099714-8112051 Arabidopsis thaliana
AT1G22920 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8099714-8109713 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368489 5261 Brassicaceae View MSA
123837329 5264 Brassicales-Malvales View MSA
124345719 5266 SBM View MSA
124247743 5268 Malvidae View MSA
124062385 5270 Rosid View MSA
123748125 5271 Pentapetalae View MSA
122791639 5272 Eudicot View MSA
122043693 5273 Angiosperm View MSA
121347496 5274 Embryophyte View MSA
123424807 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.658        
cufflinks 7.775        
cufflinks 5.446       Low
cufflinks 7.927        
cufflinks 5.774       Low
cufflinks 8.126        

0 Strain