Gene : RCN1 A. thaliana TAIR10
Primary Identifier:  ? AT1G25490 Defline:  (1 of 3) K03456 - serine/threonine-protein phosphatase 2A regulatory subunit A (PPP2R1)
Genomic Order:  2560 Name:  ? AT1G25490
Secondary Identifier:  ? PAC:19649625
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0 Pathways

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G25490 0.5kb upstream 0.5kb upstream 4406 true Chr1: 8950702-8955107 Arabidopsis thaliana
AT1G25490 0.5kb upstream 0.5kb upstream 500 false Chr1: 8950702-8951201 Arabidopsis thaliana
AT1G25490 0.5kb downstream 0.5kb downstream 4406 true Chr1: 8951202-8955607 Arabidopsis thaliana
AT1G25490 0.5kb downstream 0.5kb downstream 500 false Chr1: 8955108-8955607 Arabidopsis thaliana
AT1G25490 1.0kb upstream 1.0kb upstream 4906 true Chr1: 8950202-8955107 Arabidopsis thaliana
AT1G25490 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8950202-8951201 Arabidopsis thaliana
AT1G25490 1.0kb downstream 1.0kb downstream 4906 true Chr1: 8951202-8956107 Arabidopsis thaliana
AT1G25490 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8955108-8956107 Arabidopsis thaliana
AT1G25490 2.0kb upstream 2.0kb upstream 5906 true Chr1: 8949202-8955107 Arabidopsis thaliana
AT1G25490 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8949202-8951201 Arabidopsis thaliana
AT1G25490 2.0kb downstream 2.0kb downstream 5906 true Chr1: 8951202-8957107 Arabidopsis thaliana
AT1G25490 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8955108-8957107 Arabidopsis thaliana
AT1G25490 5.0kb upstream 5.0kb upstream 8906 true Chr1: 8946202-8955107 Arabidopsis thaliana
AT1G25490 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8946202-8951201 Arabidopsis thaliana
AT1G25490 5.0kb downstream 5.0kb downstream 8906 true Chr1: 8951202-8960107 Arabidopsis thaliana
AT1G25490 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8955108-8960107 Arabidopsis thaliana
AT1G25490 10.0kb upstream 10.0kb upstream 13906 true Chr1: 8941202-8955107 Arabidopsis thaliana
AT1G25490 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8941202-8951201 Arabidopsis thaliana
AT1G25490 10.0kb downstream 10.0kb downstream 13906 true Chr1: 8951202-8965107 Arabidopsis thaliana
AT1G25490 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8955108-8965107 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121511409 5273 Angiosperm View MSA
122376018 5261 Brassicaceae View MSA
123801116 5264 Brassicales-Malvales View MSA
124298453 5266 SBM View MSA
124150090 5268 Malvidae View MSA
123875772 5270 Rosid View MSA
123459544 5271 Pentapetalae View MSA
122494934 5272 Eudicot View MSA
120784456 5274 Embryophyte View MSA
122826369 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.847        
cufflinks 32.691     High  
cufflinks 20.019       Low
cufflinks 36.602     High  
cufflinks 20.146       Low
cufflinks 39.145     High High

0 Strain