Gene : AT1G27540 A. thaliana TAIR10
Defline:  (1 of 33) PTHR20995//PTHR20995:SF21 - FAMILY NOT NAMED // F-BOX FAMILY PROTEIN-RELATED Genomic Order:  2732
Name:  ? AT1G27540 Secondary Identifier:  ? PAC:19656652
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G27540 0.5kb upstream 0.5kb upstream 2075 true Chr1: 9566332-9568406 Arabidopsis thaliana
AT1G27540 0.5kb upstream 0.5kb upstream 500 false Chr1: 9567907-9568406 Arabidopsis thaliana
AT1G27540 0.5kb downstream 0.5kb downstream 2075 true Chr1: 9565832-9567906 Arabidopsis thaliana
AT1G27540 0.5kb downstream 0.5kb downstream 500 false Chr1: 9565832-9566331 Arabidopsis thaliana
AT1G27540 1.0kb upstream 1.0kb upstream 2575 true Chr1: 9566332-9568906 Arabidopsis thaliana
AT1G27540 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9567907-9568906 Arabidopsis thaliana
AT1G27540 1.0kb downstream 1.0kb downstream 2575 true Chr1: 9565332-9567906 Arabidopsis thaliana
AT1G27540 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9565332-9566331 Arabidopsis thaliana
AT1G27540 2.0kb upstream 2.0kb upstream 3575 true Chr1: 9566332-9569906 Arabidopsis thaliana
AT1G27540 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9567907-9569906 Arabidopsis thaliana
AT1G27540 2.0kb downstream 2.0kb downstream 3575 true Chr1: 9564332-9567906 Arabidopsis thaliana
AT1G27540 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9564332-9566331 Arabidopsis thaliana
AT1G27540 5.0kb upstream 5.0kb upstream 6575 true Chr1: 9566332-9572906 Arabidopsis thaliana
AT1G27540 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9567907-9572906 Arabidopsis thaliana
AT1G27540 5.0kb downstream 5.0kb downstream 6575 true Chr1: 9561332-9567906 Arabidopsis thaliana
AT1G27540 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9561332-9566331 Arabidopsis thaliana
AT1G27540 10.0kb upstream 10.0kb upstream 11575 true Chr1: 9566332-9577906 Arabidopsis thaliana
AT1G27540 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9567907-9577906 Arabidopsis thaliana
AT1G27540 10.0kb downstream 10.0kb downstream 11575 true Chr1: 9556332-9567906 Arabidopsis thaliana
AT1G27540 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9556332-9566331 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380331 5261 Brassicaceae View MSA
123802658 5264 Brassicales-Malvales View MSA
124350366 5266 SBM View MSA
124252699 5268 Malvidae View MSA
124074242 5270 Rosid View MSA
123753146 5271 Pentapetalae View MSA
122797944 5272 Eudicot View MSA
122050591 5273 Angiosperm View MSA
121312011 5274 Embryophyte View MSA
123349228 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.123       High
cufflinks 5.233        
cufflinks 5.146       Low
cufflinks 6.002       High
cufflinks 5.618        
cufflinks 5.504        

0 Strain