Gene : AT1G18790 A. thaliana TAIR10
Defline:  (1 of 4) PTHR10270 - SOX TRANSCRIPTION FACTOR Genomic Order:  1891
Name:  ? AT1G18790 Secondary Identifier:  ? PAC:19652872
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G18790 0.5kb upstream 0.5kb upstream 1693 true Chr1: 6478851-6480543 Arabidopsis thaliana
AT1G18790 0.5kb upstream 0.5kb upstream 500 false Chr1: 6480044-6480543 Arabidopsis thaliana
AT1G18790 0.5kb downstream 0.5kb downstream 1693 true Chr1: 6478351-6480043 Arabidopsis thaliana
AT1G18790 0.5kb downstream 0.5kb downstream 500 false Chr1: 6478351-6478850 Arabidopsis thaliana
AT1G18790 1.0kb upstream 1.0kb upstream 2193 true Chr1: 6478851-6481043 Arabidopsis thaliana
AT1G18790 1.0kb upstream 1.0kb upstream 1000 false Chr1: 6480044-6481043 Arabidopsis thaliana
AT1G18790 1.0kb downstream 1.0kb downstream 2193 true Chr1: 6477851-6480043 Arabidopsis thaliana
AT1G18790 1.0kb downstream 1.0kb downstream 1000 false Chr1: 6477851-6478850 Arabidopsis thaliana
AT1G18790 2.0kb upstream 2.0kb upstream 3193 true Chr1: 6478851-6482043 Arabidopsis thaliana
AT1G18790 2.0kb upstream 2.0kb upstream 2000 false Chr1: 6480044-6482043 Arabidopsis thaliana
AT1G18790 2.0kb downstream 2.0kb downstream 3193 true Chr1: 6476851-6480043 Arabidopsis thaliana
AT1G18790 2.0kb downstream 2.0kb downstream 2000 false Chr1: 6476851-6478850 Arabidopsis thaliana
AT1G18790 5.0kb upstream 5.0kb upstream 6193 true Chr1: 6478851-6485043 Arabidopsis thaliana
AT1G18790 5.0kb upstream 5.0kb upstream 5000 false Chr1: 6480044-6485043 Arabidopsis thaliana
AT1G18790 5.0kb downstream 5.0kb downstream 6193 true Chr1: 6473851-6480043 Arabidopsis thaliana
AT1G18790 5.0kb downstream 5.0kb downstream 5000 false Chr1: 6473851-6478850 Arabidopsis thaliana
AT1G18790 10.0kb upstream 10.0kb upstream 11193 true Chr1: 6478851-6490043 Arabidopsis thaliana
AT1G18790 10.0kb upstream 10.0kb upstream 10000 false Chr1: 6480044-6490043 Arabidopsis thaliana
AT1G18790 10.0kb downstream 10.0kb downstream 11193 true Chr1: 6468851-6480043 Arabidopsis thaliana
AT1G18790 10.0kb downstream 10.0kb downstream 10000 false Chr1: 6468851-6478850 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373412 5261 Brassicaceae View MSA
123800551 5264 Brassicales-Malvales View MSA
124297956 5266 SBM View MSA
124248041 5268 Malvidae View MSA
124074717 5270 Rosid View MSA
123751118 5271 Pentapetalae View MSA
122796675 5272 Eudicot View MSA
122050332 5273 Angiosperm View MSA
121348930 5274 Embryophyte View MSA
123428786 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  

0 Strain