Gene : OPCL1 A. thaliana TAIR10
Primary Identifier:  ? AT1G20510 Defline:  (1 of 1) K10526 - OPC-8:0 CoA ligase 1 (OPCL1)
Genomic Order:  2062 Name:  ? AT1G20510
Secondary Identifier:  ? PAC:19649193
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G20510 0.5kb upstream 0.5kb upstream 2928 true Chr1: 7103454-7106381 Arabidopsis thaliana
AT1G20510 0.5kb upstream 0.5kb upstream 500 false Chr1: 7105882-7106381 Arabidopsis thaliana
AT1G20510 0.5kb downstream 0.5kb downstream 2928 true Chr1: 7102954-7105881 Arabidopsis thaliana
AT1G20510 0.5kb downstream 0.5kb downstream 500 false Chr1: 7102954-7103453 Arabidopsis thaliana
AT1G20510 1.0kb upstream 1.0kb upstream 3428 true Chr1: 7103454-7106881 Arabidopsis thaliana
AT1G20510 1.0kb upstream 1.0kb upstream 1000 false Chr1: 7105882-7106881 Arabidopsis thaliana
AT1G20510 1.0kb downstream 1.0kb downstream 3428 true Chr1: 7102454-7105881 Arabidopsis thaliana
AT1G20510 1.0kb downstream 1.0kb downstream 1000 false Chr1: 7102454-7103453 Arabidopsis thaliana
AT1G20510 2.0kb upstream 2.0kb upstream 4428 true Chr1: 7103454-7107881 Arabidopsis thaliana
AT1G20510 2.0kb upstream 2.0kb upstream 2000 false Chr1: 7105882-7107881 Arabidopsis thaliana
AT1G20510 2.0kb downstream 2.0kb downstream 4428 true Chr1: 7101454-7105881 Arabidopsis thaliana
AT1G20510 2.0kb downstream 2.0kb downstream 2000 false Chr1: 7101454-7103453 Arabidopsis thaliana
AT1G20510 5.0kb upstream 5.0kb upstream 7428 true Chr1: 7103454-7110881 Arabidopsis thaliana
AT1G20510 5.0kb upstream 5.0kb upstream 5000 false Chr1: 7105882-7110881 Arabidopsis thaliana
AT1G20510 5.0kb downstream 5.0kb downstream 7428 true Chr1: 7098454-7105881 Arabidopsis thaliana
AT1G20510 5.0kb downstream 5.0kb downstream 5000 false Chr1: 7098454-7103453 Arabidopsis thaliana
AT1G20510 10.0kb upstream 10.0kb upstream 12428 true Chr1: 7103454-7115881 Arabidopsis thaliana
AT1G20510 10.0kb upstream 10.0kb upstream 10000 false Chr1: 7105882-7115881 Arabidopsis thaliana
AT1G20510 10.0kb downstream 10.0kb downstream 12428 true Chr1: 7093454-7105881 Arabidopsis thaliana
AT1G20510 10.0kb downstream 10.0kb downstream 10000 false Chr1: 7093454-7103453 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374067 5261 Brassicaceae View MSA
123841176 5264 Brassicales-Malvales View MSA
124344613 5266 SBM View MSA
124237621 5268 Malvidae View MSA
124062315 5270 Rosid View MSA
123736531 5271 Pentapetalae View MSA
122785928 5272 Eudicot View MSA
122043430 5273 Angiosperm View MSA
121350022 5274 Embryophyte View MSA
123427881 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.321       Low
cufflinks 93.281     High  
cufflinks 94.11     High  
cufflinks 70.675     High  
cufflinks 68.344     High  
cufflinks 69.837     High  

0 Strain