Gene : AT1G35340 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23327//PTHR23327:SF13 - RING FINGER PROTEIN 127 // ATP-DEPENDENT PROTEASE LA (LON) DOMAIN-CONTAINING PROTEIN Genomic Order:  3461
Name:  ? AT1G35340 Secondary Identifier:  ? PAC:19650556
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G35340 0.5kb upstream 0.5kb upstream 2743 true Chr1: 12977168-12979910 Arabidopsis thaliana
AT1G35340 0.5kb upstream 0.5kb upstream 500 false Chr1: 12977168-12977667 Arabidopsis thaliana
AT1G35340 0.5kb downstream 0.5kb downstream 2743 true Chr1: 12977668-12980410 Arabidopsis thaliana
AT1G35340 0.5kb downstream 0.5kb downstream 500 false Chr1: 12979911-12980410 Arabidopsis thaliana
AT1G35340 1.0kb upstream 1.0kb upstream 3243 true Chr1: 12976668-12979910 Arabidopsis thaliana
AT1G35340 1.0kb upstream 1.0kb upstream 1000 false Chr1: 12976668-12977667 Arabidopsis thaliana
AT1G35340 1.0kb downstream 1.0kb downstream 3243 true Chr1: 12977668-12980910 Arabidopsis thaliana
AT1G35340 1.0kb downstream 1.0kb downstream 1000 false Chr1: 12979911-12980910 Arabidopsis thaliana
AT1G35340 2.0kb upstream 2.0kb upstream 4243 true Chr1: 12975668-12979910 Arabidopsis thaliana
AT1G35340 2.0kb upstream 2.0kb upstream 2000 false Chr1: 12975668-12977667 Arabidopsis thaliana
AT1G35340 2.0kb downstream 2.0kb downstream 4243 true Chr1: 12977668-12981910 Arabidopsis thaliana
AT1G35340 2.0kb downstream 2.0kb downstream 2000 false Chr1: 12979911-12981910 Arabidopsis thaliana
AT1G35340 5.0kb upstream 5.0kb upstream 7243 true Chr1: 12972668-12979910 Arabidopsis thaliana
AT1G35340 5.0kb upstream 5.0kb upstream 5000 false Chr1: 12972668-12977667 Arabidopsis thaliana
AT1G35340 5.0kb downstream 5.0kb downstream 7243 true Chr1: 12977668-12984910 Arabidopsis thaliana
AT1G35340 5.0kb downstream 5.0kb downstream 5000 false Chr1: 12979911-12984910 Arabidopsis thaliana
AT1G35340 10.0kb upstream 10.0kb upstream 12243 true Chr1: 12967668-12979910 Arabidopsis thaliana
AT1G35340 10.0kb upstream 10.0kb upstream 10000 false Chr1: 12967668-12977667 Arabidopsis thaliana
AT1G35340 10.0kb downstream 10.0kb downstream 12243 true Chr1: 12977668-12989910 Arabidopsis thaliana
AT1G35340 10.0kb downstream 10.0kb downstream 10000 false Chr1: 12979911-12989910 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029609 5273 Angiosperm View MSA
122372053 5261 Brassicaceae View MSA
123831241 5264 Brassicales-Malvales View MSA
124344753 5266 SBM View MSA
124244010 5268 Malvidae View MSA
124073478 5270 Rosid View MSA
123741014 5271 Pentapetalae View MSA
122770000 5272 Eudicot View MSA
121347578 5274 Embryophyte View MSA
123425227 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.905       High
cufflinks 1.087        
cufflinks 5.045        
cufflinks 0.994        
cufflinks 4.558        
cufflinks 0.933        

0 Strain