Gene : emb1129 A. thaliana TAIR10
Primary Identifier:  ? AT1G49400 Defline:  (1 of 3) K02961 - small subunit ribosomal protein S17 (RP-S17, MRPS17, rpsQ)
Genomic Order:  3966 Name:  ? AT1G49400
Secondary Identifier:  ? PAC:19650097
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G49400 0.5kb upstream 0.5kb upstream 1671 true Chr1: 18282532-18284202 Arabidopsis thaliana
AT1G49400 0.5kb upstream 0.5kb upstream 500 false Chr1: 18282532-18283031 Arabidopsis thaliana
AT1G49400 0.5kb downstream 0.5kb downstream 1671 true Chr1: 18283032-18284702 Arabidopsis thaliana
AT1G49400 0.5kb downstream 0.5kb downstream 500 false Chr1: 18284203-18284702 Arabidopsis thaliana
AT1G49400 1.0kb upstream 1.0kb upstream 2171 true Chr1: 18282032-18284202 Arabidopsis thaliana
AT1G49400 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18282032-18283031 Arabidopsis thaliana
AT1G49400 1.0kb downstream 1.0kb downstream 2171 true Chr1: 18283032-18285202 Arabidopsis thaliana
AT1G49400 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18284203-18285202 Arabidopsis thaliana
AT1G49400 2.0kb upstream 2.0kb upstream 3171 true Chr1: 18281032-18284202 Arabidopsis thaliana
AT1G49400 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18281032-18283031 Arabidopsis thaliana
AT1G49400 2.0kb downstream 2.0kb downstream 3171 true Chr1: 18283032-18286202 Arabidopsis thaliana
AT1G49400 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18284203-18286202 Arabidopsis thaliana
AT1G49400 5.0kb upstream 5.0kb upstream 6171 true Chr1: 18278032-18284202 Arabidopsis thaliana
AT1G49400 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18278032-18283031 Arabidopsis thaliana
AT1G49400 5.0kb downstream 5.0kb downstream 6171 true Chr1: 18283032-18289202 Arabidopsis thaliana
AT1G49400 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18284203-18289202 Arabidopsis thaliana
AT1G49400 10.0kb upstream 10.0kb upstream 11171 true Chr1: 18273032-18284202 Arabidopsis thaliana
AT1G49400 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18273032-18283031 Arabidopsis thaliana
AT1G49400 10.0kb downstream 10.0kb downstream 11171 true Chr1: 18283032-18294202 Arabidopsis thaliana
AT1G49400 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18284203-18294202 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376976 5261 Brassicaceae View MSA
123836995 5264 Brassicales-Malvales View MSA
124346769 5266 SBM View MSA
124242135 5268 Malvidae View MSA
124063542 5270 Rosid View MSA
123744369 5271 Pentapetalae View MSA
122786157 5272 Eudicot View MSA
122045320 5273 Angiosperm View MSA
121347348 5274 Embryophyte View MSA
123424165 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.659        
cufflinks 22.018        
cufflinks 12.702        
cufflinks 20.926        
cufflinks 10.727       Low
cufflinks 22.691        

0 Strain